Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC10.67□□□□□ -0.7
RPS28P62857 NORAD-201ENST00000565493 5339 ntBASIC10.67□□□□□ -0.7
RPS28P62857 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPS28P62857 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC10.67□□□□□ -0.7
RPS28P62857 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC10.67□□□□□ -0.7
RPS28P62857 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
RPS28P62857 AL359504.2-201ENST00000605506 1601 ntBASIC10.67□□□□□ -0.7
RPS28P62857 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC10.67□□□□□ -0.7
RPS28P62857 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC10.67□□□□□ -0.7
RPS28P62857 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPS28P62857 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.7
RPS28P62857 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPS28P62857 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPS28P62857 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC10.67□□□□□ -0.7
RPS28P62857 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC10.67□□□□□ -0.7
RPS28P62857 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPS28P62857 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC10.67□□□□□ -0.7
RPS28P62857 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
RPS28P62857 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPS28P62857 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
RPS28P62857 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC10.67□□□□□ -0.7
RPS28P62857 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPS28P62857 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC10.67□□□□□ -0.7
RPS28P62857 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC10.67□□□□□ -0.7
RPS28P62857 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPS28P62857 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
RPS28P62857 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPS28P62857 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC10.67□□□□□ -0.7
RPS28P62857 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
RPS28P62857 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC10.67□□□□□ -0.7
RPS28P62857 CES1P1-201ENST00000421606 1704 ntBASIC10.67□□□□□ -0.7
RPS28P62857 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC10.67□□□□□ -0.7
RPS28P62857 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC10.67□□□□□ -0.7
RPS28P62857 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC10.66□□□□□ -0.7
RPS28P62857 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC10.66□□□□□ -0.7
RPS28P62857 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
RPS28P62857 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 BUB1B-PAK6-201ENST00000441369 2767 ntAPPRIS P1 TSL 2 BASIC10.66□□□□□ -0.7
RPS28P62857 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC10.66□□□□□ -0.7
RPS28P62857 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
RPS28P62857 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
RPS28P62857 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 VILL-207ENST00000465644 1857 ntTSL 5 BASIC10.66□□□□□ -0.7
RPS28P62857 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC10.66□□□□□ -0.7
RPS28P62857 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 AC138028.4-201ENST00000564984 1845 ntBASIC10.66□□□□□ -0.7
RPS28P62857 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC10.66□□□□□ -0.7
RPS28P62857 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
RPS28P62857 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
RPS28P62857 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC10.66□□□□□ -0.7
RPS28P62857 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC10.66□□□□□ -0.7
RPS28P62857 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
RPS28P62857 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
RPS28P62857 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 HSPA7-201ENST00000445535 1927 ntBASIC10.66□□□□□ -0.7
RPS28P62857 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC10.66□□□□□ -0.7
RPS28P62857 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
RPS28P62857 AC023908.3-201ENST00000564211 3047 ntBASIC10.66□□□□□ -0.7
RPS28P62857 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC10.65□□□□□ -0.7
RPS28P62857 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
RPS28P62857 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC10.65□□□□□ -0.7
RPS28P62857 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC10.65□□□□□ -0.7
RPS28P62857 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC10.65□□□□□ -0.7
RPS28P62857 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC10.65□□□□□ -0.7
RPS28P62857 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC10.65□□□□□ -0.7
RPS28P62857 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
RPS28P62857 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC10.65□□□□□ -0.7
RPS28P62857 GSN-203ENST00000373808 2664 ntTSL 2 BASIC10.65□□□□□ -0.7
RPS28P62857 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.7
RPS28P62857 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
RPS28P62857 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC10.65□□□□□ -0.7
RPS28P62857 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
RPS28P62857 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC10.65□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms