Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A3P12111 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC19.16■□□□□ 0.66
COL6A3P12111 IFT20-216ENST00000588477 774 ntTSL 5 BASIC19.16■□□□□ 0.66
COL6A3P12111 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A3P12111 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A3P12111 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A3P12111 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC19.15■□□□□ 0.66
COL6A3P12111 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
COL6A3P12111 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A3P12111 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A3P12111 AC004461.1-201ENST00000412461 403 ntBASIC19.15■□□□□ 0.66
COL6A3P12111 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A3P12111 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A3P12111 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC19.15■□□□□ 0.66
COL6A3P12111 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A3P12111 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
COL6A3P12111 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A3P12111 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A3P12111 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A3P12111 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC19.15■□□□□ 0.66
COL6A3P12111 AC011467.2-201ENST00000598425 242 ntBASIC19.15■□□□□ 0.66
COL6A3P12111 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC19.15■□□□□ 0.66
COL6A3P12111 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
COL6A3P12111 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL6A3P12111 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL6A3P12111 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL6A3P12111 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
COL6A3P12111 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
COL6A3P12111 MIR3180-4-201ENST00000582223 153 ntBASIC19.14■□□□□ 0.66
COL6A3P12111 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL6A3P12111 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL6A3P12111 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC19.14■□□□□ 0.65
COL6A3P12111 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL6A3P12111 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL6A3P12111 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL6A3P12111 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
COL6A3P12111 FAM86GP-201ENST00000448322 971 ntBASIC19.14■□□□□ 0.65
COL6A3P12111 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC19.14■□□□□ 0.65
COL6A3P12111 DAD1-205ENST00000543337 501 ntTSL 3 BASIC19.14■□□□□ 0.65
COL6A3P12111 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL6A3P12111 AC091812.2-201ENST00000619081 385 ntBASIC19.14■□□□□ 0.65
COL6A3P12111 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.14■□□□□ 0.65
COL6A3P12111 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC19.14■□□□□ 0.65
COL6A3P12111 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL6A3P12111 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL6A3P12111 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.14■□□□□ 0.65
COL6A3P12111 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL6A3P12111 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL6A3P12111 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC19.14■□□□□ 0.65
COL6A3P12111 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC19.14■□□□□ 0.65
COL6A3P12111 AC051619.7-201ENST00000568314 623 ntBASIC19.14■□□□□ 0.65
COL6A3P12111 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
COL6A3P12111 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A3P12111 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A3P12111 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A3P12111 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A3P12111 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.13■□□□□ 0.65
COL6A3P12111 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A3P12111 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A3P12111 U91328.1-201ENST00000437528 223 ntBASIC19.13■□□□□ 0.65
COL6A3P12111 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC19.13■□□□□ 0.65
COL6A3P12111 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A3P12111 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A3P12111 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A3P12111 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A3P12111 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC19.13■□□□□ 0.65
COL6A3P12111 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC19.13■□□□□ 0.65
COL6A3P12111 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A3P12111 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC19.13■□□□□ 0.65
COL6A3P12111 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A3P12111 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.13■□□□□ 0.65
COL6A3P12111 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A3P12111 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A3P12111 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC19.13■□□□□ 0.65
COL6A3P12111 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A3P12111 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A3P12111 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
COL6A3P12111 AC055876.3-201ENST00000431496 288 ntBASIC19.13■□□□□ 0.65
COL6A3P12111 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC19.13■□□□□ 0.65
COL6A3P12111 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC19.13■□□□□ 0.65
COL6A3P12111 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A3P12111 AC136632.2-201ENST00000512891 861 ntBASIC19.13■□□□□ 0.65
COL6A3P12111 HILS1-202ENST00000545329 423 ntBASIC19.13■□□□□ 0.65
COL6A3P12111 SDCCAG3P1-201ENST00000589292 1150 ntBASIC19.13■□□□□ 0.65
COL6A3P12111 AC138649.4-201ENST00000612222 287 ntBASIC19.13■□□□□ 0.65
COL6A3P12111 SRP9-204ENST00000619790 377 ntTSL 2 BASIC19.13■□□□□ 0.65
COL6A3P12111 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A3P12111 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A3P12111 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A3P12111 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A3P12111 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL6A3P12111 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC19.12■□□□□ 0.65
COL6A3P12111 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL6A3P12111 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC19.12■□□□□ 0.65
COL6A3P12111 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL6A3P12111 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.12■□□□□ 0.65
COL6A3P12111 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC19.12■□□□□ 0.65
COL6A3P12111 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC19.12■□□□□ 0.65
COL6A3P12111 REEP1-209ENST00000541910 969 ntTSL 2 BASIC19.12■□□□□ 0.65
COL6A3P12111 AC005593.1-201ENST00000624894 515 ntBASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms