Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18■□□□□ 0.47
PCNAP12004 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCNAP12004 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
PCNAP12004 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
PCNAP12004 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCNAP12004 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18■□□□□ 0.47
PCNAP12004 AL499627.1-201ENST00000569373 2188 ntBASIC18■□□□□ 0.47
PCNAP12004 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
PCNAP12004 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18■□□□□ 0.47
PCNAP12004 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCNAP12004 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PCNAP12004 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCNAP12004 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
PCNAP12004 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.99■□□□□ 0.47
PCNAP12004 AC126763.1-201ENST00000552015 2118 ntBASIC17.99■□□□□ 0.47
PCNAP12004 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCNAP12004 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCNAP12004 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCNAP12004 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCNAP12004 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCNAP12004 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCNAP12004 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.99■□□□□ 0.47
PCNAP12004 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.99■□□□□ 0.47
PCNAP12004 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCNAP12004 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
PCNAP12004 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCNAP12004 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.99■□□□□ 0.47
PCNAP12004 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCNAP12004 MIR1238-201ENST00000408483 83 ntBASIC17.99■□□□□ 0.47
PCNAP12004 AL390955.1-201ENST00000428694 934 ntBASIC17.99■□□□□ 0.47
PCNAP12004 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCNAP12004 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
PCNAP12004 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
PCNAP12004 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.99■□□□□ 0.47
PCNAP12004 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
PCNAP12004 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PCNAP12004 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.99■□□□□ 0.47
PCNAP12004 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCNAP12004 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PCNAP12004 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
PCNAP12004 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
PCNAP12004 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCNAP12004 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCNAP12004 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCNAP12004 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCNAP12004 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCNAP12004 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCNAP12004 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.98■□□□□ 0.47
PCNAP12004 AC008556.1-201ENST00000610908 2040 ntBASIC17.98■□□□□ 0.47
PCNAP12004 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.98■□□□□ 0.47
PCNAP12004 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.98■□□□□ 0.47
PCNAP12004 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCNAP12004 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.98■□□□□ 0.47
PCNAP12004 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PCNAP12004 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.98■□□□□ 0.47
PCNAP12004 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.98■□□□□ 0.47
PCNAP12004 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.98■□□□□ 0.47
PCNAP12004 AL355075.4-201ENST00000554988 638 ntBASIC17.98■□□□□ 0.47
PCNAP12004 AP005242.2-201ENST00000580065 1175 ntBASIC17.98■□□□□ 0.47
PCNAP12004 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC17.98■□□□□ 0.47
PCNAP12004 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCNAP12004 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCNAP12004 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PCNAP12004 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCNAP12004 AL354751.1-201ENST00000412768 1863 ntBASIC17.98■□□□□ 0.47
PCNAP12004 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.98■□□□□ 0.47
PCNAP12004 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
PCNAP12004 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PCNAP12004 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCNAP12004 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCNAP12004 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PCNAP12004 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCNAP12004 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
PCNAP12004 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
PCNAP12004 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCNAP12004 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.97■□□□□ 0.47
PCNAP12004 GPAT2P1-201ENST00000444924 1672 ntBASIC17.97■□□□□ 0.47
PCNAP12004 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCNAP12004 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PCNAP12004 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PCNAP12004 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.97■□□□□ 0.47
PCNAP12004 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCNAP12004 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
PCNAP12004 AL023284.2-201ENST00000405850 579 ntBASIC17.97■□□□□ 0.47
PCNAP12004 MCCD1P1-208ENST00000445732 328 ntBASIC17.97■□□□□ 0.47
PCNAP12004 MIR4497-201ENST00000583208 89 ntBASIC17.97■□□□□ 0.47
PCNAP12004 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCNAP12004 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCNAP12004 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCNAP12004 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCNAP12004 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.97■□□□□ 0.47
PCNAP12004 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
PCNAP12004 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.96■□□□□ 0.47
PCNAP12004 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
PCNAP12004 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PCNAP12004 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
PCNAP12004 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
PCNAP12004 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
PCNAP12004 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.96■□□□□ 0.47
PCNAP12004 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms