Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
VIMP08670 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VIMP08670 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VIMP08670 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.54■□□□□ 0.56
VIMP08670 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VIMP08670 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.54■□□□□ 0.56
VIMP08670 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
VIMP08670 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.54■□□□□ 0.56
VIMP08670 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC18.54■□□□□ 0.56
VIMP08670 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC18.54■□□□□ 0.56
VIMP08670 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC18.54■□□□□ 0.56
VIMP08670 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
VIMP08670 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.54■□□□□ 0.56
VIMP08670 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC18.54■□□□□ 0.56
VIMP08670 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VIMP08670 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VIMP08670 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
VIMP08670 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VIMP08670 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
VIMP08670 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VIMP08670 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VIMP08670 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
VIMP08670 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VIMP08670 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC18.53■□□□□ 0.56
VIMP08670 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
VIMP08670 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VIMP08670 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VIMP08670 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
VIMP08670 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.53■□□□□ 0.56
VIMP08670 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.53■□□□□ 0.56
VIMP08670 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VIMP08670 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.53■□□□□ 0.56
VIMP08670 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VIMP08670 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VIMP08670 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
VIMP08670 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.53■□□□□ 0.56
VIMP08670 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VIMP08670 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
VIMP08670 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.53■□□□□ 0.56
VIMP08670 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
VIMP08670 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VIMP08670 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VIMP08670 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.53■□□□□ 0.56
VIMP08670 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
VIMP08670 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
VIMP08670 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
VIMP08670 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VIMP08670 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.53■□□□□ 0.56
VIMP08670 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VIMP08670 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC18.53■□□□□ 0.56
VIMP08670 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VIMP08670 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC18.53■□□□□ 0.56
VIMP08670 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VIMP08670 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VIMP08670 AC005181.1-201ENST00000604782 1256 ntBASIC18.53■□□□□ 0.56
VIMP08670 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.53■□□□□ 0.56
VIMP08670 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VIMP08670 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.53■□□□□ 0.56
VIMP08670 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
VIMP08670 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VIMP08670 AC022211.2-201ENST00000585075 2527 ntBASIC18.53■□□□□ 0.56
VIMP08670 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VIMP08670 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VIMP08670 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VIMP08670 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VIMP08670 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.53■□□□□ 0.56
VIMP08670 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VIMP08670 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.56
VIMP08670 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VIMP08670 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
VIMP08670 AC112777.1-201ENST00000540175 1423 ntBASIC18.52■□□□□ 0.56
VIMP08670 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
VIMP08670 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
VIMP08670 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VIMP08670 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VIMP08670 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VIMP08670 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.52■□□□□ 0.56
VIMP08670 LSM12P1-201ENST00000411836 588 ntBASIC18.52■□□□□ 0.56
VIMP08670 TUBB8P6-201ENST00000436895 1288 ntBASIC18.52■□□□□ 0.56
VIMP08670 TSPY23P-201ENST00000440136 739 ntBASIC18.52■□□□□ 0.56
VIMP08670 RPS2P52-201ENST00000469610 820 ntBASIC18.52■□□□□ 0.56
VIMP08670 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
VIMP08670 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.52■□□□□ 0.56
VIMP08670 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.52■□□□□ 0.56
VIMP08670 KRT18P16-201ENST00000510337 1294 ntBASIC18.52■□□□□ 0.56
VIMP08670 DUX4L16-201ENST00000555130 1264 ntBASIC18.52■□□□□ 0.56
VIMP08670 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.52■□□□□ 0.56
VIMP08670 AC005829.2-201ENST00000571422 1056 ntBASIC18.52■□□□□ 0.56
VIMP08670 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.52■□□□□ 0.56
VIMP08670 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VIMP08670 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VIMP08670 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VIMP08670 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
VIMP08670 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VIMP08670 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.52■□□□□ 0.55
VIMP08670 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
VIMP08670 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
VIMP08670 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
VIMP08670 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VIMP08670 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms