Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
COL4A1P02462 AL662844.1-201ENST00000546340 181 ntBASIC22.52■■□□□ 1.2
COL4A1P02462 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC22.52■■□□□ 1.2
COL4A1P02462 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC22.52■■□□□ 1.2
COL4A1P02462 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
COL4A1P02462 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC22.52■■□□□ 1.2
COL4A1P02462 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC22.51■■□□□ 1.19
COL4A1P02462 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL4A1P02462 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL4A1P02462 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC22.51■■□□□ 1.19
COL4A1P02462 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL4A1P02462 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL4A1P02462 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC22.51■■□□□ 1.19
COL4A1P02462 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
COL4A1P02462 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL4A1P02462 CCS-201ENST00000310190 942 ntTSL 5 BASIC22.51■■□□□ 1.19
COL4A1P02462 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
COL4A1P02462 MEG3-211ENST00000452514 461 ntTSL 3 BASIC22.51■■□□□ 1.19
COL4A1P02462 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC22.51■■□□□ 1.19
COL4A1P02462 MINOS1P3-201ENST00000457048 203 ntBASIC22.51■■□□□ 1.19
COL4A1P02462 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
COL4A1P02462 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC22.51■■□□□ 1.19
COL4A1P02462 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC22.51■■□□□ 1.19
COL4A1P02462 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC22.51■■□□□ 1.19
COL4A1P02462 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
COL4A1P02462 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
COL4A1P02462 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC22.5■■□□□ 1.19
COL4A1P02462 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC22.5■■□□□ 1.19
COL4A1P02462 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC22.5■■□□□ 1.19
COL4A1P02462 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC22.5■■□□□ 1.19
COL4A1P02462 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC22.5■■□□□ 1.19
COL4A1P02462 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC22.5■■□□□ 1.19
COL4A1P02462 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
COL4A1P02462 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC22.5■■□□□ 1.19
COL4A1P02462 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC22.5■■□□□ 1.19
COL4A1P02462 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
COL4A1P02462 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC22.5■■□□□ 1.19
COL4A1P02462 AC011840.4-201ENST00000578471 627 ntBASIC22.5■■□□□ 1.19
COL4A1P02462 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC22.5■■□□□ 1.19
COL4A1P02462 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC22.5■■□□□ 1.19
COL4A1P02462 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
COL4A1P02462 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
COL4A1P02462 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC22.49■■□□□ 1.19
COL4A1P02462 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
COL4A1P02462 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
COL4A1P02462 FGFR3P6-201ENST00000457012 610 ntBASIC22.49■■□□□ 1.19
COL4A1P02462 AL773604.1-201ENST00000617417 272 ntBASIC22.49■■□□□ 1.19
COL4A1P02462 MYLKP1-201ENST00000509077 1580 ntBASIC22.49■■□□□ 1.19
COL4A1P02462 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
COL4A1P02462 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC22.49■■□□□ 1.19
COL4A1P02462 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC22.49■■□□□ 1.19
COL4A1P02462 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
COL4A1P02462 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
COL4A1P02462 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
COL4A1P02462 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
COL4A1P02462 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC22.49■■□□□ 1.19
COL4A1P02462 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
COL4A1P02462 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
COL4A1P02462 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
COL4A1P02462 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC22.49■■□□□ 1.19
COL4A1P02462 TEX30-205ENST00000376029 959 ntTSL 2 BASIC22.49■■□□□ 1.19
COL4A1P02462 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
COL4A1P02462 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC22.49■■□□□ 1.19
COL4A1P02462 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
COL4A1P02462 MOK-208ENST00000519058 917 ntTSL 2 BASIC22.49■■□□□ 1.19
COL4A1P02462 AP001005.1-201ENST00000571755 1248 ntBASIC22.49■■□□□ 1.19
COL4A1P02462 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC22.49■■□□□ 1.19
COL4A1P02462 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL4A1P02462 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
COL4A1P02462 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
COL4A1P02462 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
COL4A1P02462 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL4A1P02462 COBL-210ENST00000632460 1941 ntTSL 5 BASIC22.48■■□□□ 1.19
COL4A1P02462 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL4A1P02462 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL4A1P02462 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL4A1P02462 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL4A1P02462 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
COL4A1P02462 KRT18P67-201ENST00000432816 1264 ntBASIC22.48■■□□□ 1.19
COL4A1P02462 HNRNPDP1-201ENST00000439535 754 ntBASIC22.48■■□□□ 1.19
COL4A1P02462 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC22.48■■□□□ 1.19
COL4A1P02462 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC22.48■■□□□ 1.19
COL4A1P02462 BX640515.1-201ENST00000617215 977 ntBASIC22.48■■□□□ 1.19
COL4A1P02462 ABBA01031661.1-201ENST00000634362 1253 ntBASIC22.48■■□□□ 1.19
COL4A1P02462 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC22.48■■□□□ 1.19
COL4A1P02462 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
COL4A1P02462 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
COL4A1P02462 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL4A1P02462 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
COL4A1P02462 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL4A1P02462 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
COL4A1P02462 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
COL4A1P02462 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL4A1P02462 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL4A1P02462 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL4A1P02462 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL4A1P02462 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL4A1P02462 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC22.47■■□□□ 1.19
COL4A1P02462 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
COL4A1P02462 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms