Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
SIX3O95343 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SIX3O95343 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.05■□□□□ 0.48
SIX3O95343 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC18.05■□□□□ 0.48
SIX3O95343 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC18.05■□□□□ 0.48
SIX3O95343 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.05■□□□□ 0.48
SIX3O95343 USP36-216ENST00000589424 970 ntTSL 5 BASIC18.05■□□□□ 0.48
SIX3O95343 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.05■□□□□ 0.48
SIX3O95343 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SIX3O95343 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SIX3O95343 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.05■□□□□ 0.48
SIX3O95343 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.05■□□□□ 0.48
SIX3O95343 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.05■□□□□ 0.48
SIX3O95343 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SIX3O95343 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SIX3O95343 AC034236.2-201ENST00000606662 1610 ntBASIC18.05■□□□□ 0.48
SIX3O95343 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SIX3O95343 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SIX3O95343 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX3O95343 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SIX3O95343 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX3O95343 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
SIX3O95343 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SIX3O95343 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
SIX3O95343 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.04■□□□□ 0.48
SIX3O95343 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX3O95343 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX3O95343 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX3O95343 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC18.04■□□□□ 0.48
SIX3O95343 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
SIX3O95343 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
SIX3O95343 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SIX3O95343 CA15P1-201ENST00000481698 905 ntBASIC18.04■□□□□ 0.48
SIX3O95343 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18.04■□□□□ 0.48
SIX3O95343 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.04■□□□□ 0.48
SIX3O95343 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX3O95343 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX3O95343 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.04■□□□□ 0.48
SIX3O95343 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.04■□□□□ 0.48
SIX3O95343 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
SIX3O95343 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.04■□□□□ 0.48
SIX3O95343 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX3O95343 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX3O95343 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.04■□□□□ 0.48
SIX3O95343 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX3O95343 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SIX3O95343 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SIX3O95343 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC18.04■□□□□ 0.48
SIX3O95343 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.04■□□□□ 0.48
SIX3O95343 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SIX3O95343 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SIX3O95343 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
SIX3O95343 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SIX3O95343 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SIX3O95343 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC18.03■□□□□ 0.48
SIX3O95343 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.03■□□□□ 0.48
SIX3O95343 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SIX3O95343 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
SIX3O95343 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SIX3O95343 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
SIX3O95343 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SIX3O95343 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
SIX3O95343 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SIX3O95343 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SIX3O95343 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SIX3O95343 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SIX3O95343 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SIX3O95343 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
SIX3O95343 PRR31-201ENST00000371629 978 ntTSL 2 BASIC18.03■□□□□ 0.48
SIX3O95343 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.03■□□□□ 0.48
SIX3O95343 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.03■□□□□ 0.48
SIX3O95343 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SIX3O95343 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC18.03■□□□□ 0.48
SIX3O95343 AP003071.4-201ENST00000562276 1284 ntBASIC18.03■□□□□ 0.48
SIX3O95343 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
SIX3O95343 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SIX3O95343 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.03■□□□□ 0.48
SIX3O95343 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SIX3O95343 AC036111.1-201ENST00000533973 1582 ntBASIC18.03■□□□□ 0.48
SIX3O95343 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
SIX3O95343 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SIX3O95343 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.03■□□□□ 0.48
SIX3O95343 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SIX3O95343 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SIX3O95343 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.03■□□□□ 0.48
SIX3O95343 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SIX3O95343 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
SIX3O95343 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.03■□□□□ 0.48
SIX3O95343 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SIX3O95343 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SIX3O95343 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
SIX3O95343 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.02■□□□□ 0.48
SIX3O95343 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SIX3O95343 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.02■□□□□ 0.48
SIX3O95343 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC18.02■□□□□ 0.48
SIX3O95343 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.02■□□□□ 0.48
SIX3O95343 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SIX3O95343 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.02■□□□□ 0.48
SIX3O95343 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SIX3O95343 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms