Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LDB3O75112 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LDB3O75112 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
LDB3O75112 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LDB3O75112 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LDB3O75112 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LDB3O75112 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LDB3O75112 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.36■□□□□ 0.37
LDB3O75112 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.36■□□□□ 0.37
LDB3O75112 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LDB3O75112 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
LDB3O75112 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
LDB3O75112 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LDB3O75112 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
LDB3O75112 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LDB3O75112 AL163051.1-201ENST00000569214 1512 ntBASIC17.36■□□□□ 0.37
LDB3O75112 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
LDB3O75112 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.36■□□□□ 0.37
LDB3O75112 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.36■□□□□ 0.37
LDB3O75112 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LDB3O75112 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB3O75112 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.35■□□□□ 0.37
LDB3O75112 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LDB3O75112 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.35■□□□□ 0.37
LDB3O75112 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC17.35■□□□□ 0.37
LDB3O75112 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB3O75112 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB3O75112 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
LDB3O75112 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.35■□□□□ 0.37
LDB3O75112 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.35■□□□□ 0.37
LDB3O75112 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB3O75112 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB3O75112 RNF152P1-201ENST00000397754 604 ntBASIC17.35■□□□□ 0.37
LDB3O75112 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
LDB3O75112 TSPY5P-201ENST00000426936 936 ntBASIC17.35■□□□□ 0.37
LDB3O75112 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC17.35■□□□□ 0.37
LDB3O75112 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.35■□□□□ 0.37
LDB3O75112 CD81-212ENST00000526072 1172 ntTSL 5 BASIC17.35■□□□□ 0.37
LDB3O75112 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB3O75112 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.35■□□□□ 0.37
LDB3O75112 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LDB3O75112 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB3O75112 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.35■□□□□ 0.37
LDB3O75112 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
LDB3O75112 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB3O75112 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
LDB3O75112 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB3O75112 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.35■□□□□ 0.37
LDB3O75112 AC073592.3-201ENST00000625118 1834 ntBASIC17.35■□□□□ 0.37
LDB3O75112 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB3O75112 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB3O75112 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
LDB3O75112 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
LDB3O75112 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB3O75112 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB3O75112 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB3O75112 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB3O75112 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB3O75112 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDB3O75112 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LDB3O75112 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDB3O75112 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDB3O75112 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.34■□□□□ 0.37
LDB3O75112 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDB3O75112 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDB3O75112 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDB3O75112 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LDB3O75112 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDB3O75112 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDB3O75112 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDB3O75112 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LDB3O75112 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.34■□□□□ 0.37
LDB3O75112 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDB3O75112 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.34■□□□□ 0.37
LDB3O75112 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
LDB3O75112 DUX4L26-201ENST00000489078 1255 ntBASIC17.34■□□□□ 0.37
LDB3O75112 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LDB3O75112 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
LDB3O75112 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.34■□□□□ 0.37
LDB3O75112 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.34■□□□□ 0.37
LDB3O75112 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.34■□□□□ 0.37
LDB3O75112 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.34■□□□□ 0.37
LDB3O75112 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.34■□□□□ 0.37
LDB3O75112 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDB3O75112 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
LDB3O75112 AL157888.1-201ENST00000631930 593 ntBASIC17.34■□□□□ 0.37
LDB3O75112 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LDB3O75112 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
LDB3O75112 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LDB3O75112 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDB3O75112 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDB3O75112 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LDB3O75112 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDB3O75112 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.33■□□□□ 0.37
LDB3O75112 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.33■□□□□ 0.37
LDB3O75112 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LDB3O75112 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
LDB3O75112 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
LDB3O75112 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.33■□□□□ 0.37
LDB3O75112 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms