Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP29Q9HBJ7 LTBR-211ENST00000543190 785 ntTSL 3 BASIC19.04■□□□□ 0.64
USP29Q9HBJ7 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USP29Q9HBJ7 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC19.04■□□□□ 0.64
USP29Q9HBJ7 AL023803.3-201ENST00000615559 522 ntBASIC19.04■□□□□ 0.64
USP29Q9HBJ7 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USP29Q9HBJ7 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC19.04■□□□□ 0.64
USP29Q9HBJ7 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USP29Q9HBJ7 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USP29Q9HBJ7 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP29Q9HBJ7 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
USP29Q9HBJ7 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP29Q9HBJ7 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.04■□□□□ 0.64
USP29Q9HBJ7 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
USP29Q9HBJ7 AL133373.2-201ENST00000623187 2828 ntBASIC19.04■□□□□ 0.64
USP29Q9HBJ7 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
USP29Q9HBJ7 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USP29Q9HBJ7 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP29Q9HBJ7 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.04■□□□□ 0.64
USP29Q9HBJ7 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 LGALS8-AS1-201ENST00000487567 1457 ntBASIC19.03■□□□□ 0.64
USP29Q9HBJ7 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 AC093677.2-201ENST00000600169 1863 ntBASIC19.03■□□□□ 0.64
USP29Q9HBJ7 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 DUX4L26-201ENST00000489078 1255 ntBASIC19.03■□□□□ 0.64
USP29Q9HBJ7 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USP29Q9HBJ7 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP29Q9HBJ7 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP29Q9HBJ7 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP29Q9HBJ7 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC19.02■□□□□ 0.64
USP29Q9HBJ7 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP29Q9HBJ7 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
USP29Q9HBJ7 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
USP29Q9HBJ7 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
USP29Q9HBJ7 ESPNP-201ENST00000270691 2015 ntBASIC19.02■□□□□ 0.64
USP29Q9HBJ7 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
USP29Q9HBJ7 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC19.02■□□□□ 0.64
USP29Q9HBJ7 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.02■□□□□ 0.64
USP29Q9HBJ7 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP29Q9HBJ7 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC19.02■□□□□ 0.64
USP29Q9HBJ7 RBM42-202ENST00000586618 771 ntTSL 3 BASIC19.02■□□□□ 0.64
USP29Q9HBJ7 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP29Q9HBJ7 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP29Q9HBJ7 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC19.02■□□□□ 0.63
USP29Q9HBJ7 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.63
USP29Q9HBJ7 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.02■□□□□ 0.63
USP29Q9HBJ7 NOC2LP2-201ENST00000407594 1944 ntBASIC19.02■□□□□ 0.63
USP29Q9HBJ7 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC19.02■□□□□ 0.63
USP29Q9HBJ7 PXK-206ENST00000463280 2825 ntTSL 2 BASIC19.01■□□□□ 0.63
USP29Q9HBJ7 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC19.01■□□□□ 0.63
USP29Q9HBJ7 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
USP29Q9HBJ7 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC19.01■□□□□ 0.63
USP29Q9HBJ7 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC19.01■□□□□ 0.63
USP29Q9HBJ7 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
USP29Q9HBJ7 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
USP29Q9HBJ7 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC19.01■□□□□ 0.63
USP29Q9HBJ7 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP29Q9HBJ7 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC19.01■□□□□ 0.63
USP29Q9HBJ7 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.01■□□□□ 0.63
USP29Q9HBJ7 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC19.01■□□□□ 0.63
USP29Q9HBJ7 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.01■□□□□ 0.63
USP29Q9HBJ7 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
USP29Q9HBJ7 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.01■□□□□ 0.63
USP29Q9HBJ7 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP29Q9HBJ7 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC19.01■□□□□ 0.63
USP29Q9HBJ7 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC19.01■□□□□ 0.63
USP29Q9HBJ7 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC19.01■□□□□ 0.63
USP29Q9HBJ7 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC19.01■□□□□ 0.63
USP29Q9HBJ7 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP29Q9HBJ7 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP29Q9HBJ7 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC19.01■□□□□ 0.63
USP29Q9HBJ7 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms