Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.67■□□□□ 0.42
BRF2Q9HAW0 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
BRF2Q9HAW0 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
BRF2Q9HAW0 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
BRF2Q9HAW0 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
BRF2Q9HAW0 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
BRF2Q9HAW0 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.67■□□□□ 0.42
BRF2Q9HAW0 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.67■□□□□ 0.42
BRF2Q9HAW0 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
BRF2Q9HAW0 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
BRF2Q9HAW0 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
BRF2Q9HAW0 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC17.67■□□□□ 0.42
BRF2Q9HAW0 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
BRF2Q9HAW0 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
BRF2Q9HAW0 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.67■□□□□ 0.42
BRF2Q9HAW0 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.67■□□□□ 0.42
BRF2Q9HAW0 AC128688.1-201ENST00000487626 519 ntBASIC17.67■□□□□ 0.42
BRF2Q9HAW0 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
BRF2Q9HAW0 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
BRF2Q9HAW0 AC009065.1-201ENST00000564055 1225 ntBASIC17.67■□□□□ 0.42
BRF2Q9HAW0 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.67■□□□□ 0.42
BRF2Q9HAW0 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
BRF2Q9HAW0 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.67■□□□□ 0.42
BRF2Q9HAW0 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
BRF2Q9HAW0 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
BRF2Q9HAW0 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
BRF2Q9HAW0 AC009102.3-201ENST00000623118 1491 ntBASIC17.67■□□□□ 0.42
BRF2Q9HAW0 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
BRF2Q9HAW0 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
BRF2Q9HAW0 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.67■□□□□ 0.42
BRF2Q9HAW0 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
BRF2Q9HAW0 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
BRF2Q9HAW0 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.66■□□□□ 0.42
BRF2Q9HAW0 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
BRF2Q9HAW0 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
BRF2Q9HAW0 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
BRF2Q9HAW0 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
BRF2Q9HAW0 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
BRF2Q9HAW0 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.66■□□□□ 0.42
BRF2Q9HAW0 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
BRF2Q9HAW0 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.66■□□□□ 0.42
BRF2Q9HAW0 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
BRF2Q9HAW0 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
BRF2Q9HAW0 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.66■□□□□ 0.42
BRF2Q9HAW0 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC17.66■□□□□ 0.42
BRF2Q9HAW0 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.66■□□□□ 0.42
BRF2Q9HAW0 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.66■□□□□ 0.42
BRF2Q9HAW0 MIR3180-4-201ENST00000582223 153 ntBASIC17.66■□□□□ 0.42
BRF2Q9HAW0 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.66■□□□□ 0.42
BRF2Q9HAW0 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.66■□□□□ 0.42
BRF2Q9HAW0 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.66■□□□□ 0.42
BRF2Q9HAW0 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
BRF2Q9HAW0 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
BRF2Q9HAW0 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
BRF2Q9HAW0 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
BRF2Q9HAW0 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
BRF2Q9HAW0 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.66■□□□□ 0.42
BRF2Q9HAW0 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
BRF2Q9HAW0 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
BRF2Q9HAW0 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
BRF2Q9HAW0 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
BRF2Q9HAW0 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
BRF2Q9HAW0 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRF2Q9HAW0 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.64■□□□□ 0.42
BRF2Q9HAW0 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
BRF2Q9HAW0 NOC2LP2-201ENST00000407594 1944 ntBASIC17.64■□□□□ 0.42
BRF2Q9HAW0 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.64■□□□□ 0.42
BRF2Q9HAW0 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms