Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 AC073912.3-201ENST00000624414 853 ntBASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 AL163051.1-201ENST00000569214 1512 ntBASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 MADD-208ENST00000405573 1823 ntTSL 5 BASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 BICD1-207ENST00000551848 1962 ntBASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 AC009947.2-201ENST00000444014 672 ntBASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 RPS20-210ENST00000523936 899 ntTSL 2 BASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 AC135050.7-201ENST00000624508 2218 ntBASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 AL162741.1-201ENST00000565563 1558 ntBASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC20.5■□□□□ 0.87
CCDC65Q8IXS2 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC65Q8IXS2 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC65Q8IXS2 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC65Q8IXS2 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.49■□□□□ 0.87
CCDC65Q8IXS2 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC65Q8IXS2 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC65Q8IXS2 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC65Q8IXS2 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC65Q8IXS2 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC65Q8IXS2 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC65Q8IXS2 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC20.49■□□□□ 0.87
CCDC65Q8IXS2 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC20.49■□□□□ 0.87
CCDC65Q8IXS2 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC65Q8IXS2 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC20.49■□□□□ 0.87
CCDC65Q8IXS2 AC104390.1-201ENST00000555663 520 ntBASIC20.49■□□□□ 0.87
CCDC65Q8IXS2 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
CCDC65Q8IXS2 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC65Q8IXS2 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC65Q8IXS2 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC20.49■□□□□ 0.87
CCDC65Q8IXS2 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC65Q8IXS2 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC20.49■□□□□ 0.87
CCDC65Q8IXS2 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC65Q8IXS2 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
CCDC65Q8IXS2 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC65Q8IXS2 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCDC65Q8IXS2 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC65Q8IXS2 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC65Q8IXS2 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
CCDC65Q8IXS2 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC65Q8IXS2 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC20.48■□□□□ 0.87
CCDC65Q8IXS2 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC65Q8IXS2 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC65Q8IXS2 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
CCDC65Q8IXS2 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC65Q8IXS2 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC65Q8IXS2 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC65Q8IXS2 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC65Q8IXS2 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC65Q8IXS2 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC20.48■□□□□ 0.87
CCDC65Q8IXS2 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.48■□□□□ 0.87
CCDC65Q8IXS2 NT5C-210ENST00000582160 860 ntTSL 2 BASIC20.48■□□□□ 0.87
CCDC65Q8IXS2 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC20.48■□□□□ 0.87
CCDC65Q8IXS2 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC65Q8IXS2 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC65Q8IXS2 AC133561.5-201ENST00000635547 218 ntBASIC20.48■□□□□ 0.87
CCDC65Q8IXS2 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC20.48■□□□□ 0.87
CCDC65Q8IXS2 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC65Q8IXS2 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC20.48■□□□□ 0.87
CCDC65Q8IXS2 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC65Q8IXS2 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms