Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
C9orf40Q8IXQ3 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
C9orf40Q8IXQ3 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
C9orf40Q8IXQ3 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
C9orf40Q8IXQ3 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.03■□□□□ 0.32
C9orf40Q8IXQ3 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.03■□□□□ 0.32
C9orf40Q8IXQ3 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.03■□□□□ 0.32
C9orf40Q8IXQ3 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC17.03■□□□□ 0.32
C9orf40Q8IXQ3 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
C9orf40Q8IXQ3 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
C9orf40Q8IXQ3 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.32
C9orf40Q8IXQ3 AL121956.5-201ENST00000625261 221 ntBASIC17.03■□□□□ 0.32
C9orf40Q8IXQ3 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
C9orf40Q8IXQ3 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
C9orf40Q8IXQ3 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
C9orf40Q8IXQ3 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
C9orf40Q8IXQ3 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
C9orf40Q8IXQ3 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
C9orf40Q8IXQ3 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.03■□□□□ 0.32
C9orf40Q8IXQ3 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
C9orf40Q8IXQ3 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
C9orf40Q8IXQ3 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
C9orf40Q8IXQ3 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
C9orf40Q8IXQ3 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
C9orf40Q8IXQ3 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.02■□□□□ 0.32
C9orf40Q8IXQ3 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
C9orf40Q8IXQ3 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
C9orf40Q8IXQ3 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC17.02■□□□□ 0.32
C9orf40Q8IXQ3 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
C9orf40Q8IXQ3 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
C9orf40Q8IXQ3 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.32
C9orf40Q8IXQ3 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.02■□□□□ 0.32
C9orf40Q8IXQ3 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.02■□□□□ 0.32
C9orf40Q8IXQ3 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
C9orf40Q8IXQ3 CD320-202ENST00000537716 1119 ntTSL 2 BASIC17.02■□□□□ 0.32
C9orf40Q8IXQ3 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC17.02■□□□□ 0.32
C9orf40Q8IXQ3 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
C9orf40Q8IXQ3 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
C9orf40Q8IXQ3 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.02■□□□□ 0.31
C9orf40Q8IXQ3 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
C9orf40Q8IXQ3 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.02■□□□□ 0.31
C9orf40Q8IXQ3 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.02■□□□□ 0.31
C9orf40Q8IXQ3 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 FAM86EP-206ENST00000510506 987 ntBASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.31
C9orf40Q8IXQ3 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
C9orf40Q8IXQ3 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
C9orf40Q8IXQ3 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
C9orf40Q8IXQ3 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
C9orf40Q8IXQ3 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17■□□□□ 0.31
C9orf40Q8IXQ3 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
C9orf40Q8IXQ3 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17■□□□□ 0.31
C9orf40Q8IXQ3 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
C9orf40Q8IXQ3 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17■□□□□ 0.31
C9orf40Q8IXQ3 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17■□□□□ 0.31
C9orf40Q8IXQ3 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17■□□□□ 0.31
C9orf40Q8IXQ3 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
C9orf40Q8IXQ3 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17■□□□□ 0.31
C9orf40Q8IXQ3 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17■□□□□ 0.31
C9orf40Q8IXQ3 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17■□□□□ 0.31
C9orf40Q8IXQ3 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17■□□□□ 0.31
C9orf40Q8IXQ3 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17■□□□□ 0.31
C9orf40Q8IXQ3 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17■□□□□ 0.31
C9orf40Q8IXQ3 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17■□□□□ 0.31
C9orf40Q8IXQ3 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms