Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
SKA3Q8IX90 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
SKA3Q8IX90 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
SKA3Q8IX90 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SKA3Q8IX90 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SKA3Q8IX90 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
SKA3Q8IX90 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC16.33■□□□□ 0.21
SKA3Q8IX90 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
SKA3Q8IX90 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SKA3Q8IX90 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SKA3Q8IX90 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SKA3Q8IX90 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC16.33■□□□□ 0.2
SKA3Q8IX90 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SKA3Q8IX90 USP49-202ENST00000373010 2446 ntTSL 5 BASIC16.33■□□□□ 0.2
SKA3Q8IX90 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC16.33■□□□□ 0.2
SKA3Q8IX90 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SKA3Q8IX90 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SKA3Q8IX90 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SKA3Q8IX90 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SKA3Q8IX90 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC16.33■□□□□ 0.2
SKA3Q8IX90 GPX4-207ENST00000589115 812 ntTSL 2 BASIC16.33■□□□□ 0.2
SKA3Q8IX90 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
SKA3Q8IX90 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SKA3Q8IX90 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.2
SKA3Q8IX90 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC16.33■□□□□ 0.2
SKA3Q8IX90 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC16.33■□□□□ 0.2
SKA3Q8IX90 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
SKA3Q8IX90 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SKA3Q8IX90 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC16.33■□□□□ 0.2
SKA3Q8IX90 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SKA3Q8IX90 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC16.33■□□□□ 0.2
SKA3Q8IX90 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SKA3Q8IX90 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SKA3Q8IX90 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SKA3Q8IX90 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
SKA3Q8IX90 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SKA3Q8IX90 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SKA3Q8IX90 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SKA3Q8IX90 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SKA3Q8IX90 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC16.32■□□□□ 0.2
SKA3Q8IX90 ILF2-202ENST00000368681 726 ntTSL 2 BASIC16.32■□□□□ 0.2
SKA3Q8IX90 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SKA3Q8IX90 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
SKA3Q8IX90 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
SKA3Q8IX90 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC16.32■□□□□ 0.2
SKA3Q8IX90 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SKA3Q8IX90 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SKA3Q8IX90 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC16.32■□□□□ 0.2
SKA3Q8IX90 SLC25A3P1-201ENST00000443844 931 ntBASIC16.32■□□□□ 0.2
SKA3Q8IX90 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
SKA3Q8IX90 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC16.32■□□□□ 0.2
SKA3Q8IX90 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC16.32■□□□□ 0.2
SKA3Q8IX90 WIZP1-201ENST00000531444 2299 ntBASIC16.32■□□□□ 0.2
SKA3Q8IX90 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SKA3Q8IX90 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.32■□□□□ 0.2
SKA3Q8IX90 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SKA3Q8IX90 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SKA3Q8IX90 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC16.32■□□□□ 0.2
SKA3Q8IX90 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SKA3Q8IX90 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC16.32■□□□□ 0.2
SKA3Q8IX90 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
SKA3Q8IX90 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC16.32■□□□□ 0.2
SKA3Q8IX90 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.32■□□□□ 0.2
SKA3Q8IX90 AC034236.2-201ENST00000606662 1610 ntBASIC16.32■□□□□ 0.2
SKA3Q8IX90 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
SKA3Q8IX90 AP000997.3-201ENST00000623333 2250 ntBASIC16.32■□□□□ 0.2
SKA3Q8IX90 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC16.32■□□□□ 0.2
SKA3Q8IX90 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SKA3Q8IX90 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SKA3Q8IX90 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
SKA3Q8IX90 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SKA3Q8IX90 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SKA3Q8IX90 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SKA3Q8IX90 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SKA3Q8IX90 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SKA3Q8IX90 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SKA3Q8IX90 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SKA3Q8IX90 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC16.31■□□□□ 0.2
SKA3Q8IX90 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SKA3Q8IX90 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SKA3Q8IX90 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
SKA3Q8IX90 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SKA3Q8IX90 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SKA3Q8IX90 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC16.31■□□□□ 0.2
SKA3Q8IX90 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SKA3Q8IX90 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SKA3Q8IX90 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC16.31■□□□□ 0.2
SKA3Q8IX90 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
SKA3Q8IX90 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SKA3Q8IX90 ECEL1P3-201ENST00000427961 737 ntBASIC16.31■□□□□ 0.2
SKA3Q8IX90 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
SKA3Q8IX90 AL512604.3-201ENST00000569583 964 ntBASIC16.31■□□□□ 0.2
SKA3Q8IX90 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC16.31■□□□□ 0.2
SKA3Q8IX90 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
SKA3Q8IX90 LINC01023-201ENST00000606054 436 ntBASIC16.31■□□□□ 0.2
SKA3Q8IX90 AC005363.2-201ENST00000618631 242 ntBASIC16.31■□□□□ 0.2
SKA3Q8IX90 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC16.31■□□□□ 0.2
SKA3Q8IX90 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC16.31■□□□□ 0.2
SKA3Q8IX90 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.31■□□□□ 0.2
SKA3Q8IX90 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 358.8 ms