Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP41Q3LFD5 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP41Q3LFD5 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP41Q3LFD5 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP41Q3LFD5 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
USP41Q3LFD5 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP41Q3LFD5 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP41Q3LFD5 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP41Q3LFD5 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP41Q3LFD5 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP41Q3LFD5 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP41Q3LFD5 AC233702.3-201ENST00000578656 1387 ntBASIC19.63■□□□□ 0.73
USP41Q3LFD5 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP41Q3LFD5 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP41Q3LFD5 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
USP41Q3LFD5 AC246785.2-201ENST00000432512 513 ntBASIC19.63■□□□□ 0.73
USP41Q3LFD5 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC19.63■□□□□ 0.73
USP41Q3LFD5 FOSL1P1-201ENST00000511041 816 ntBASIC19.63■□□□□ 0.73
USP41Q3LFD5 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC19.63■□□□□ 0.73
USP41Q3LFD5 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC19.63■□□□□ 0.73
USP41Q3LFD5 KLK8-205ENST00000593490 267 ntTSL 3 BASIC19.63■□□□□ 0.73
USP41Q3LFD5 LINC01711-201ENST00000598340 967 ntBASIC19.63■□□□□ 0.73
USP41Q3LFD5 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC19.63■□□□□ 0.73
USP41Q3LFD5 AL732292.2-201ENST00000609649 430 ntBASIC19.63■□□□□ 0.73
USP41Q3LFD5 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP41Q3LFD5 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP41Q3LFD5 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP41Q3LFD5 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP41Q3LFD5 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP41Q3LFD5 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP41Q3LFD5 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USP41Q3LFD5 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP41Q3LFD5 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP41Q3LFD5 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USP41Q3LFD5 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP41Q3LFD5 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC19.62■□□□□ 0.73
USP41Q3LFD5 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC19.62■□□□□ 0.73
USP41Q3LFD5 KRT17P6-201ENST00000453795 1220 ntBASIC19.62■□□□□ 0.73
USP41Q3LFD5 AC074051.2-201ENST00000565115 352 ntBASIC19.62■□□□□ 0.73
USP41Q3LFD5 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC19.62■□□□□ 0.73
USP41Q3LFD5 Z69720.1-201ENST00000601483 472 ntBASIC19.62■□□□□ 0.73
USP41Q3LFD5 AC124864.1-201ENST00000623408 392 ntBASIC19.62■□□□□ 0.73
USP41Q3LFD5 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
USP41Q3LFD5 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC19.62■□□□□ 0.73
USP41Q3LFD5 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP41Q3LFD5 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP41Q3LFD5 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP41Q3LFD5 AL163051.1-201ENST00000569214 1512 ntBASIC19.61■□□□□ 0.73
USP41Q3LFD5 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USP41Q3LFD5 AL353692.3-201ENST00000407031 1396 ntBASIC19.61■□□□□ 0.73
USP41Q3LFD5 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP41Q3LFD5 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP41Q3LFD5 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP41Q3LFD5 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USP41Q3LFD5 KRT18P31-201ENST00000506277 1292 ntBASIC19.61■□□□□ 0.73
USP41Q3LFD5 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC19.61■□□□□ 0.73
USP41Q3LFD5 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC19.61■□□□□ 0.73
USP41Q3LFD5 AL592071.1-201ENST00000611956 408 ntBASIC19.61■□□□□ 0.73
USP41Q3LFD5 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC19.61■□□□□ 0.73
USP41Q3LFD5 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.61■□□□□ 0.73
USP41Q3LFD5 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP41Q3LFD5 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP41Q3LFD5 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
USP41Q3LFD5 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP41Q3LFD5 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP41Q3LFD5 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP41Q3LFD5 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP41Q3LFD5 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP41Q3LFD5 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP41Q3LFD5 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP41Q3LFD5 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC19.6■□□□□ 0.73
USP41Q3LFD5 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP41Q3LFD5 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP41Q3LFD5 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP41Q3LFD5 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP41Q3LFD5 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP41Q3LFD5 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.6■□□□□ 0.73
USP41Q3LFD5 RN7SL606P-201ENST00000472779 293 ntBASIC19.6■□□□□ 0.73
USP41Q3LFD5 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19.6■□□□□ 0.73
USP41Q3LFD5 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC19.6■□□□□ 0.73
USP41Q3LFD5 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC19.6■□□□□ 0.73
USP41Q3LFD5 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP41Q3LFD5 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP41Q3LFD5 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP41Q3LFD5 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP41Q3LFD5 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
USP41Q3LFD5 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC19.6■□□□□ 0.73
USP41Q3LFD5 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP41Q3LFD5 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP41Q3LFD5 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
USP41Q3LFD5 LINC00167-201ENST00000530583 1419 ntBASIC19.59■□□□□ 0.73
USP41Q3LFD5 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
USP41Q3LFD5 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
USP41Q3LFD5 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP41Q3LFD5 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP41Q3LFD5 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC19.59■□□□□ 0.73
USP41Q3LFD5 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP41Q3LFD5 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC19.59■□□□□ 0.73
USP41Q3LFD5 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC19.59■□□□□ 0.73
USP41Q3LFD5 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms