Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SHROOM1Q2M3G4 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
SHROOM1Q2M3G4 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC21.53■■□□□ 1.04
SHROOM1Q2M3G4 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC21.53■■□□□ 1.04
SHROOM1Q2M3G4 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SHROOM1Q2M3G4 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC21.52■■□□□ 1.04
SHROOM1Q2M3G4 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SHROOM1Q2M3G4 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SHROOM1Q2M3G4 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SHROOM1Q2M3G4 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC21.52■■□□□ 1.04
SHROOM1Q2M3G4 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC21.52■■□□□ 1.04
SHROOM1Q2M3G4 FAAHP1-202ENST00000446499 1238 ntBASIC21.52■■□□□ 1.04
SHROOM1Q2M3G4 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
SHROOM1Q2M3G4 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SHROOM1Q2M3G4 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC21.52■■□□□ 1.04
SHROOM1Q2M3G4 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC21.52■■□□□ 1.04
SHROOM1Q2M3G4 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SHROOM1Q2M3G4 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC21.52■■□□□ 1.04
SHROOM1Q2M3G4 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SHROOM1Q2M3G4 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
SHROOM1Q2M3G4 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.03
SHROOM1Q2M3G4 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SHROOM1Q2M3G4 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
SHROOM1Q2M3G4 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC21.51■■□□□ 1.03
SHROOM1Q2M3G4 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC21.51■■□□□ 1.03
SHROOM1Q2M3G4 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SHROOM1Q2M3G4 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SHROOM1Q2M3G4 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC21.51■■□□□ 1.03
SHROOM1Q2M3G4 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SHROOM1Q2M3G4 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SHROOM1Q2M3G4 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
SHROOM1Q2M3G4 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC21.51■■□□□ 1.03
SHROOM1Q2M3G4 MRPL3P1-201ENST00000400109 1033 ntBASIC21.51■■□□□ 1.03
SHROOM1Q2M3G4 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC21.51■■□□□ 1.03
SHROOM1Q2M3G4 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC21.51■■□□□ 1.03
SHROOM1Q2M3G4 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC21.51■■□□□ 1.03
SHROOM1Q2M3G4 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SHROOM1Q2M3G4 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SHROOM1Q2M3G4 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SHROOM1Q2M3G4 AL024508.2-201ENST00000607749 1894 ntBASIC21.51■■□□□ 1.03
SHROOM1Q2M3G4 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SHROOM1Q2M3G4 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
SHROOM1Q2M3G4 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
SHROOM1Q2M3G4 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SHROOM1Q2M3G4 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC21.5■■□□□ 1.03
SHROOM1Q2M3G4 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHROOM1Q2M3G4 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHROOM1Q2M3G4 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHROOM1Q2M3G4 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC21.5■■□□□ 1.03
SHROOM1Q2M3G4 SLC25A24-204ENST00000569674 2357 ntBASIC21.5■■□□□ 1.03
SHROOM1Q2M3G4 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHROOM1Q2M3G4 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHROOM1Q2M3G4 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHROOM1Q2M3G4 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHROOM1Q2M3G4 DFFB-203ENST00000341385 572 ntTSL 5 BASIC21.5■■□□□ 1.03
SHROOM1Q2M3G4 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SHROOM1Q2M3G4 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHROOM1Q2M3G4 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHROOM1Q2M3G4 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHROOM1Q2M3G4 NUS1P2-201ENST00000417358 873 ntBASIC21.5■■□□□ 1.03
SHROOM1Q2M3G4 FICD-205ENST00000552758 603 ntTSL 2 BASIC21.5■■□□□ 1.03
SHROOM1Q2M3G4 Z69720.1-201ENST00000601483 472 ntBASIC21.5■■□□□ 1.03
SHROOM1Q2M3G4 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC21.5■■□□□ 1.03
SHROOM1Q2M3G4 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHROOM1Q2M3G4 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHROOM1Q2M3G4 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHROOM1Q2M3G4 KRT89P-201ENST00000620027 1478 ntBASIC21.5■■□□□ 1.03
SHROOM1Q2M3G4 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC21.5■■□□□ 1.03
SHROOM1Q2M3G4 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHROOM1Q2M3G4 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHROOM1Q2M3G4 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHROOM1Q2M3G4 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHROOM1Q2M3G4 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHROOM1Q2M3G4 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SHROOM1Q2M3G4 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHROOM1Q2M3G4 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHROOM1Q2M3G4 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHROOM1Q2M3G4 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
SHROOM1Q2M3G4 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SHROOM1Q2M3G4 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SHROOM1Q2M3G4 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHROOM1Q2M3G4 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHROOM1Q2M3G4 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
SHROOM1Q2M3G4 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SHROOM1Q2M3G4 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC21.49■■□□□ 1.03
SHROOM1Q2M3G4 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SHROOM1Q2M3G4 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC21.49■■□□□ 1.03
SHROOM1Q2M3G4 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC21.49■■□□□ 1.03
SHROOM1Q2M3G4 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC21.49■■□□□ 1.03
SHROOM1Q2M3G4 CDV3-207ENST00000508481 661 ntTSL 3 BASIC21.49■■□□□ 1.03
SHROOM1Q2M3G4 GUSBP12-201ENST00000513727 720 ntBASIC21.49■■□□□ 1.03
SHROOM1Q2M3G4 AP002469.2-201ENST00000531724 424 ntBASIC21.49■■□□□ 1.03
SHROOM1Q2M3G4 BMF-207ENST00000559701 630 ntTSL 3 BASIC21.49■■□□□ 1.03
SHROOM1Q2M3G4 SLC25A6P4-201ENST00000586535 553 ntBASIC21.49■■□□□ 1.03
SHROOM1Q2M3G4 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC21.49■■□□□ 1.03
SHROOM1Q2M3G4 AL353801.3-201ENST00000609898 542 ntBASIC21.49■■□□□ 1.03
SHROOM1Q2M3G4 GXYLT1P4-201ENST00000613576 1192 ntBASIC21.49■■□□□ 1.03
SHROOM1Q2M3G4 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHROOM1Q2M3G4 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHROOM1Q2M3G4 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms