Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
PCDH1Q08174 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PCDH1Q08174 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PCDH1Q08174 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PCDH1Q08174 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDH1Q08174 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
PCDH1Q08174 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDH1Q08174 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDH1Q08174 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.82■□□□□ 0.44
PCDH1Q08174 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
PCDH1Q08174 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.82■□□□□ 0.44
PCDH1Q08174 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
PCDH1Q08174 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDH1Q08174 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PCDH1Q08174 INGX-201ENST00000359239 846 ntBASIC17.82■□□□□ 0.44
PCDH1Q08174 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDH1Q08174 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDH1Q08174 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDH1Q08174 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
PCDH1Q08174 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDH1Q08174 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDH1Q08174 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDH1Q08174 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.82■□□□□ 0.44
PCDH1Q08174 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDH1Q08174 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDH1Q08174 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDH1Q08174 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.82■□□□□ 0.44
PCDH1Q08174 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.82■□□□□ 0.44
PCDH1Q08174 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.82■□□□□ 0.44
PCDH1Q08174 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDH1Q08174 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
PCDH1Q08174 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
PCDH1Q08174 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PCDH1Q08174 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
PCDH1Q08174 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
PCDH1Q08174 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.82■□□□□ 0.44
PCDH1Q08174 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PCDH1Q08174 AC093677.2-201ENST00000600169 1863 ntBASIC17.82■□□□□ 0.44
PCDH1Q08174 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
PCDH1Q08174 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDH1Q08174 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.81■□□□□ 0.44
PCDH1Q08174 AL390961.4-201ENST00000623958 2535 ntBASIC17.81■□□□□ 0.44
PCDH1Q08174 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH1Q08174 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.81■□□□□ 0.44
PCDH1Q08174 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
PCDH1Q08174 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH1Q08174 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH1Q08174 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
PCDH1Q08174 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
PCDH1Q08174 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH1Q08174 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.81■□□□□ 0.44
PCDH1Q08174 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH1Q08174 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH1Q08174 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH1Q08174 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH1Q08174 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH1Q08174 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.81■□□□□ 0.44
PCDH1Q08174 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH1Q08174 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.81■□□□□ 0.44
PCDH1Q08174 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
PCDH1Q08174 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH1Q08174 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.81■□□□□ 0.44
PCDH1Q08174 AC104390.1-201ENST00000555663 520 ntBASIC17.81■□□□□ 0.44
PCDH1Q08174 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.81■□□□□ 0.44
PCDH1Q08174 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.81■□□□□ 0.44
PCDH1Q08174 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.81■□□□□ 0.44
PCDH1Q08174 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH1Q08174 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH1Q08174 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH1Q08174 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.81■□□□□ 0.44
PCDH1Q08174 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.81■□□□□ 0.44
PCDH1Q08174 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
PCDH1Q08174 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.81■□□□□ 0.44
PCDH1Q08174 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDH1Q08174 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
PCDH1Q08174 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
PCDH1Q08174 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PCDH1Q08174 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDH1Q08174 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDH1Q08174 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.8■□□□□ 0.44
PCDH1Q08174 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
PCDH1Q08174 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.8■□□□□ 0.44
PCDH1Q08174 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDH1Q08174 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDH1Q08174 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDH1Q08174 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC17.8■□□□□ 0.44
PCDH1Q08174 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC17.8■□□□□ 0.44
PCDH1Q08174 MIR149-201ENST00000384879 89 ntBASIC17.8■□□□□ 0.44
PCDH1Q08174 AL512604.3-201ENST00000569583 964 ntBASIC17.8■□□□□ 0.44
PCDH1Q08174 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PCDH1Q08174 FAM87A-204ENST00000613235 858 ntBASIC17.8■□□□□ 0.44
PCDH1Q08174 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDH1Q08174 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PCDH1Q08174 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.8■□□□□ 0.44
PCDH1Q08174 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.8■□□□□ 0.44
PCDH1Q08174 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDH1Q08174 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.8■□□□□ 0.44
PCDH1Q08174 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.8■□□□□ 0.44
PCDH1Q08174 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PCDH1Q08174 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms