Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VSX2P58304 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
VSX2P58304 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VSX2P58304 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.69■□□□□ 0.42
VSX2P58304 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC17.69■□□□□ 0.42
VSX2P58304 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.69■□□□□ 0.42
VSX2P58304 MIR3917-201ENST00000580971 93 ntBASIC17.69■□□□□ 0.42
VSX2P58304 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
VSX2P58304 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.69■□□□□ 0.42
VSX2P58304 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VSX2P58304 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VSX2P58304 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
VSX2P58304 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VSX2P58304 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC17.69■□□□□ 0.42
VSX2P58304 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VSX2P58304 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VSX2P58304 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.69■□□□□ 0.42
VSX2P58304 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.69■□□□□ 0.42
VSX2P58304 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.69■□□□□ 0.42
VSX2P58304 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VSX2P58304 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
VSX2P58304 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VSX2P58304 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VSX2P58304 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VSX2P58304 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VSX2P58304 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VSX2P58304 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.68■□□□□ 0.42
VSX2P58304 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.68■□□□□ 0.42
VSX2P58304 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
VSX2P58304 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VSX2P58304 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VSX2P58304 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
VSX2P58304 AL031133.1-201ENST00000406807 723 ntBASIC17.68■□□□□ 0.42
VSX2P58304 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.68■□□□□ 0.42
VSX2P58304 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
VSX2P58304 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.68■□□□□ 0.42
VSX2P58304 KRT8P50-201ENST00000562022 1438 ntBASIC17.68■□□□□ 0.42
VSX2P58304 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.68■□□□□ 0.42
VSX2P58304 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VSX2P58304 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VSX2P58304 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VSX2P58304 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
VSX2P58304 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VSX2P58304 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
VSX2P58304 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VSX2P58304 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
VSX2P58304 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VSX2P58304 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VSX2P58304 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VSX2P58304 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.67■□□□□ 0.42
VSX2P58304 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
VSX2P58304 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
VSX2P58304 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VSX2P58304 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VSX2P58304 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
VSX2P58304 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.67■□□□□ 0.42
VSX2P58304 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.67■□□□□ 0.42
VSX2P58304 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
VSX2P58304 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
VSX2P58304 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.67■□□□□ 0.42
VSX2P58304 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VSX2P58304 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
VSX2P58304 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.67■□□□□ 0.42
VSX2P58304 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VSX2P58304 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.67■□□□□ 0.42
VSX2P58304 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VSX2P58304 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.67■□□□□ 0.42
VSX2P58304 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
VSX2P58304 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VSX2P58304 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
VSX2P58304 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VSX2P58304 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
VSX2P58304 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
VSX2P58304 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
VSX2P58304 AL499627.1-201ENST00000569373 2188 ntBASIC17.66■□□□□ 0.42
VSX2P58304 LINC01311-201ENST00000565162 1445 ntBASIC17.66■□□□□ 0.42
VSX2P58304 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VSX2P58304 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
VSX2P58304 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VSX2P58304 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VSX2P58304 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.66■□□□□ 0.42
VSX2P58304 AC092597.1-201ENST00000487352 616 ntBASIC17.66■□□□□ 0.42
VSX2P58304 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
VSX2P58304 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.66■□□□□ 0.42
VSX2P58304 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.66■□□□□ 0.42
VSX2P58304 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.66■□□□□ 0.42
VSX2P58304 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.66■□□□□ 0.42
VSX2P58304 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
VSX2P58304 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VSX2P58304 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VSX2P58304 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VSX2P58304 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VSX2P58304 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
VSX2P58304 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VSX2P58304 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
VSX2P58304 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VSX2P58304 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VSX2P58304 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VSX2P58304 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VSX2P58304 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms