Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC17.38■□□□□ 0.37
RFX3P48380 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
RFX3P48380 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RFX3P48380 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RFX3P48380 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
RFX3P48380 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RFX3P48380 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RFX3P48380 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.38■□□□□ 0.37
RFX3P48380 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.38■□□□□ 0.37
RFX3P48380 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RFX3P48380 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.38■□□□□ 0.37
RFX3P48380 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.38■□□□□ 0.37
RFX3P48380 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RFX3P48380 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RFX3P48380 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RFX3P48380 Z98044.1-201ENST00000632503 1764 ntBASIC17.38■□□□□ 0.37
RFX3P48380 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.37■□□□□ 0.37
RFX3P48380 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.37■□□□□ 0.37
RFX3P48380 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.37■□□□□ 0.37
RFX3P48380 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
RFX3P48380 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.37■□□□□ 0.37
RFX3P48380 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
RFX3P48380 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RFX3P48380 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RFX3P48380 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RFX3P48380 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RFX3P48380 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.37■□□□□ 0.37
RFX3P48380 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.37■□□□□ 0.37
RFX3P48380 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.37■□□□□ 0.37
RFX3P48380 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RFX3P48380 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.37■□□□□ 0.37
RFX3P48380 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RFX3P48380 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RFX3P48380 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
RFX3P48380 C2orf69P3-201ENST00000565542 1120 ntBASIC17.37■□□□□ 0.37
RFX3P48380 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC17.37■□□□□ 0.37
RFX3P48380 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RFX3P48380 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
RFX3P48380 WIZP1-201ENST00000531444 2299 ntBASIC17.37■□□□□ 0.37
RFX3P48380 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RFX3P48380 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RFX3P48380 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.37■□□□□ 0.37
RFX3P48380 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
RFX3P48380 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RFX3P48380 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RFX3P48380 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RFX3P48380 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
RFX3P48380 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.36■□□□□ 0.37
RFX3P48380 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.36■□□□□ 0.37
RFX3P48380 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RFX3P48380 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.36■□□□□ 0.37
RFX3P48380 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RFX3P48380 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RFX3P48380 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.36■□□□□ 0.37
RFX3P48380 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
RFX3P48380 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RFX3P48380 AL031598.1-201ENST00000561511 1773 ntBASIC17.36■□□□□ 0.37
RFX3P48380 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RFX3P48380 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
RFX3P48380 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RFX3P48380 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
RFX3P48380 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RFX3P48380 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
RFX3P48380 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RFX3P48380 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC17.36■□□□□ 0.37
RFX3P48380 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RFX3P48380 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.36■□□□□ 0.37
RFX3P48380 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.36■□□□□ 0.37
RFX3P48380 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.36■□□□□ 0.37
RFX3P48380 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RFX3P48380 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RFX3P48380 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.36■□□□□ 0.37
RFX3P48380 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RFX3P48380 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.36■□□□□ 0.37
RFX3P48380 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RFX3P48380 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
RFX3P48380 KRT8P9-201ENST00000558927 1449 ntBASIC17.36■□□□□ 0.37
RFX3P48380 KRT8P32-201ENST00000512863 1461 ntBASIC17.36■□□□□ 0.37
RFX3P48380 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.36■□□□□ 0.37
RFX3P48380 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RFX3P48380 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
RFX3P48380 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
RFX3P48380 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RFX3P48380 GPAT2P1-201ENST00000444924 1672 ntBASIC17.36■□□□□ 0.37
RFX3P48380 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFX3P48380 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFX3P48380 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.35■□□□□ 0.37
RFX3P48380 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFX3P48380 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFX3P48380 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.35■□□□□ 0.37
RFX3P48380 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
RFX3P48380 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFX3P48380 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFX3P48380 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RFX3P48380 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.35■□□□□ 0.37
RFX3P48380 MMP23A-201ENST00000234610 1017 ntBASIC17.35■□□□□ 0.37
RFX3P48380 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RFX3P48380 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RFX3P48380 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.35■□□□□ 0.37
RFX3P48380 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms