Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC19.14■□□□□ 0.65
HMGA1P17096 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC19.14■□□□□ 0.65
HMGA1P17096 AC074051.2-201ENST00000565115 352 ntBASIC19.14■□□□□ 0.65
HMGA1P17096 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC19.14■□□□□ 0.65
HMGA1P17096 AC111152.3-201ENST00000569699 673 ntBASIC19.14■□□□□ 0.65
HMGA1P17096 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.14■□□□□ 0.65
HMGA1P17096 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC19.14■□□□□ 0.65
HMGA1P17096 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.14■□□□□ 0.65
HMGA1P17096 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.14■□□□□ 0.65
HMGA1P17096 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC19.14■□□□□ 0.65
HMGA1P17096 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGA1P17096 LINC00167-201ENST00000530583 1419 ntBASIC19.14■□□□□ 0.65
HMGA1P17096 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGA1P17096 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HMGA1P17096 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HMGA1P17096 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGA1P17096 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC19.13■□□□□ 0.65
HMGA1P17096 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HMGA1P17096 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGA1P17096 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HMGA1P17096 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGA1P17096 KRT17P6-201ENST00000453795 1220 ntBASIC19.13■□□□□ 0.65
HMGA1P17096 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC19.13■□□□□ 0.65
HMGA1P17096 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
HMGA1P17096 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC19.13■□□□□ 0.65
HMGA1P17096 IFNL4P1-201ENST00000607083 540 ntBASIC19.13■□□□□ 0.65
HMGA1P17096 GXYLT1P4-201ENST00000613576 1192 ntBASIC19.13■□□□□ 0.65
HMGA1P17096 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC19.13■□□□□ 0.65
HMGA1P17096 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC19.13■□□□□ 0.65
HMGA1P17096 NARF-204ENST00000390006 1766 ntTSL 2 BASIC19.13■□□□□ 0.65
HMGA1P17096 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGA1P17096 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
HMGA1P17096 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGA1P17096 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGA1P17096 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.12■□□□□ 0.65
HMGA1P17096 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGA1P17096 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.12■□□□□ 0.65
HMGA1P17096 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC19.12■□□□□ 0.65
HMGA1P17096 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGA1P17096 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGA1P17096 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HMGA1P17096 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGA1P17096 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGA1P17096 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC19.12■□□□□ 0.65
HMGA1P17096 BET1L-206ENST00000486280 665 ntTSL 3 BASIC19.12■□□□□ 0.65
HMGA1P17096 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC19.12■□□□□ 0.65
HMGA1P17096 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGA1P17096 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.12■□□□□ 0.65
HMGA1P17096 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HMGA1P17096 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC19.12■□□□□ 0.65
HMGA1P17096 Z69720.1-201ENST00000601483 472 ntBASIC19.12■□□□□ 0.65
HMGA1P17096 AL353801.3-201ENST00000609898 542 ntBASIC19.12■□□□□ 0.65
HMGA1P17096 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
HMGA1P17096 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGA1P17096 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.12■□□□□ 0.65
HMGA1P17096 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGA1P17096 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGA1P17096 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGA1P17096 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGA1P17096 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC19.11■□□□□ 0.65
HMGA1P17096 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
HMGA1P17096 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGA1P17096 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGA1P17096 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HMGA1P17096 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.11■□□□□ 0.65
HMGA1P17096 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC19.11■□□□□ 0.65
HMGA1P17096 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HMGA1P17096 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGA1P17096 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGA1P17096 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC19.11■□□□□ 0.65
HMGA1P17096 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC19.11■□□□□ 0.65
HMGA1P17096 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC19.11■□□□□ 0.65
HMGA1P17096 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC19.11■□□□□ 0.65
HMGA1P17096 KRT18P31-201ENST00000506277 1292 ntBASIC19.11■□□□□ 0.65
HMGA1P17096 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC19.11■□□□□ 0.65
HMGA1P17096 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGA1P17096 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC19.11■□□□□ 0.65
HMGA1P17096 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC19.11■□□□□ 0.65
HMGA1P17096 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC19.11■□□□□ 0.65
HMGA1P17096 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC19.11■□□□□ 0.65
HMGA1P17096 AL121772.3-201ENST00000610840 674 ntBASIC19.11■□□□□ 0.65
HMGA1P17096 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HMGA1P17096 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HMGA1P17096 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGA1P17096 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGA1P17096 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
HMGA1P17096 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC19.11■□□□□ 0.65
HMGA1P17096 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGA1P17096 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.11■□□□□ 0.65
HMGA1P17096 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGA1P17096 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HMGA1P17096 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
HMGA1P17096 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
HMGA1P17096 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HMGA1P17096 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGA1P17096 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGA1P17096 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HMGA1P17096 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGA1P17096 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGA1P17096 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms