Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.257e-25■■□□□ 13.4
YBX3P16989 ATP5G3-205ENST00000497075 1313 ntTSL 218.32■□□□□ 0.527e-25■■□□□ 13.4
YBX3P16989 ATP5G3-203ENST00000409194 795 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.57e-25■■□□□ 13.4
YBX3P16989 ATP5G3-201ENST00000284727 5484 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.87e-25■■□□□ 13.4
YBX3P16989 JPT1-205ENST00000470924 663 ntTSL 5 BASIC17.05■□□□□ 0.321e-12■■□□□ 13.4
YBX3P16989 JPT1-208ENST00000481647 576 ntTSL 5 BASIC15.07■□□□□ 01e-12■■□□□ 13.4
YBX3P16989 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC27.67■■■□□ 2.028e-15■■□□□ 13.4
YBX3P16989 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC22.56■■□□□ 1.28e-15■■□□□ 13.4
YBX3P16989 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.148e-15■■□□□ 13.4
YBX3P16989 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC19.84■□□□□ 0.778e-15■■□□□ 13.4
YBX3P16989 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC17.22■□□□□ 0.351e-11■■□□□ 13.4
YBX3P16989 PHF10-204ENST00000480008 4285 ntTSL 1 (best)17.15■□□□□ 0.341e-11■■□□□ 13.4
YBX3P16989 CSDE1-217ENST00000534699 2667 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.219e-10■■□□□ 13.4
YBX3P16989 CSDE1-204ENST00000369530 3774 ntTSL 1 (best) BASIC8.93□□□□□ -0.989e-10■■□□□ 13.4
YBX3P16989 CSDE1-214ENST00000530886 3459 ntTSL 5 BASIC8.39□□□□□ -1.079e-10■■□□□ 13.4
YBX3P16989 CSDE1-218ENST00000610726 4312 ntTSL 5 BASIC7.52□□□□□ -1.219e-10■■□□□ 13.4
YBX3P16989 CSDE1-201ENST00000261443 3228 ntTSL 1 (best) BASIC7.34□□□□□ -1.239e-10■■□□□ 13.4
YBX3P16989 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC6.82□□□□□ -1.329e-10■■□□□ 13.4
YBX3P16989 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC6.67□□□□□ -1.349e-10■■□□□ 13.4
YBX3P16989 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.349e-10■■□□□ 13.4
YBX3P16989 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.528e-7■■□□□ 13.4
YBX3P16989 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC24.53■■□□□ 1.524e-54■■□□□ 13.4
YBX3P16989 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.82e-20■■□□□ 13.4
YBX3P16989 MIF-202ENST00000465752 589 ntTSL 1 (best)24.54■■□□□ 1.522e-20■■□□□ 13.4
YBX3P16989 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.762e-20■■□□□ 13.4
YBX3P16989 DCUN1D5-208ENST00000529294 727 ntTSL 316.18■□□□□ 0.182e-13■■□□□ 13.4
YBX3P16989 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.112e-6■■□□□ 13.4
YBX3P16989 MFN2-201ENST00000235329 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.372e-6■■□□□ 13.4
YBX3P16989 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.551e-8■■□□□ 13.4
YBX3P16989 GTPBP2-201ENST00000307114 2830 ntTSL 2 BASIC12.78□□□□□ -0.361e-8■■□□□ 13.4
YBX3P16989 GTPBP2-208ENST00000476510 2816 ntTSL 512.48□□□□□ -0.411e-8■■□□□ 13.4
YBX3P16989 RPLP0-227ENST00000552902 869 ntTSL 227.34■■□□□ 1.973e-88■■□□□ 13.4
YBX3P16989 SF3A3-201ENST00000373019 3673 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.858e-8■■□□□ 13.4
YBX3P16989 PPP4C-203ENST00000562222 742 ntTSL 331.74■■■□□ 2.673e-9■■□□□ 13.4
YBX3P16989 PPP4C-207ENST00000563732 846 ntTSL 226.51■■□□□ 1.833e-9■■□□□ 13.4
YBX3P16989 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC8.35□□□□□ -1.071e-6■■□□□ 13.4
YBX3P16989 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.071e-6■■□□□ 13.4
YBX3P16989 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.111e-6■■□□□ 13.4
YBX3P16989 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC8.09□□□□□ -1.111e-6■■□□□ 13.4
YBX3P16989 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC7.65□□□□□ -1.181e-6■■□□□ 13.4
YBX3P16989 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC7.21□□□□□ -1.261e-6■■□□□ 13.4
YBX3P16989 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.133e-7■■□□□ 13.4
YBX3P16989 LIMS1-203ENST00000393310 4392 ntAPPRIS P3 TSL 1 (best) BASIC9.76□□□□□ -0.853e-7■■□□□ 13.4
YBX3P16989 DNA2-202ENST00000399179 3207 ntTSL 27.5□□□□□ -1.211e-6■■□□□ 13.4
YBX3P16989 DNA2-203ENST00000399180 3207 ntTSL 2 BASIC7.5□□□□□ -1.211e-6■■□□□ 13.4
YBX3P16989 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC6.98□□□□□ -1.291e-6■■□□□ 13.4
YBX3P16989 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.411e-6■■□□□ 13.4
YBX3P16989 FBXW5-202ENST00000428398 718 ntTSL 536.79■■■■□ 3.484e-8■■□□□ 13.4
YBX3P16989 FBXW5-203ENST00000443788 839 ntTSL 235.2■■■■□ 3.234e-8■■□□□ 13.4
YBX3P16989 FBXW5-208ENST00000491246 785 ntTSL 527.02■■□□□ 1.924e-8■■□□□ 13.4
YBX3P16989 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.79e-8■■□□□ 13.4
YBX3P16989 PCBP2-225ENST00000553064 1786 ntTSL 515.6■□□□□ 0.092e-34■■□□□ 13.4
YBX3P16989 PCBP2-211ENST00000547987 681 ntTSL 310.71□□□□□ -0.692e-34■■□□□ 13.4
YBX3P16989 ANKHD1-206ENST00000412116 1826 ntTSL 510.22□□□□□ -0.772e-7■■□□□ 13.4
YBX3P16989 ANKHD1-201ENST00000246149 2062 ntTSL 28.21□□□□□ -1.12e-7■■□□□ 13.4
YBX3P16989 MTCH2-204ENST00000533571 535 ntTSL 220.62■□□□□ 0.899e-9■■□□□ 13.4
YBX3P16989 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.542e-14■■□□□ 13.4
YBX3P16989 UQCRQ-206ENST00000498309 874 ntTSL 219.42■□□□□ 0.72e-14■■□□□ 13.4
YBX3P16989 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.592e-14■■□□□ 13.4
YBX3P16989 UQCRQ-202ENST00000378667 429 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.462e-14■■□□□ 13.4
YBX3P16989 UQCRQ-205ENST00000496429 258 ntTSL 210.31□□□□□ -0.762e-14■■□□□ 13.4
YBX3P16989 DHCR7-211ENST00000534701 456 ntTSL 313.51□□□□□ -0.252e-6■■□□□ 13.4
YBX3P16989 HIST1H1E-201ENST00000304218 754 ntAPPRIS P1 BASIC15.56■□□□□ 0.085e-38■■□□□ 13.4
YBX3P16989 NDUFA9-201ENST00000266544 8363 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.072e-9■■□□□ 13.4
YBX3P16989 TFDP1-203ENST00000453989 792 ntTSL 331.4■■■□□ 2.621e-8■■□□□ 13.4
YBX3P16989 TFDP1-206ENST00000475254 804 ntTSL 324.55■■□□□ 1.521e-8■■□□□ 13.4
YBX3P16989 TFDP1-205ENST00000465174 955 ntTSL 318.51■□□□□ 0.551e-8■■□□□ 13.4
YBX3P16989 SMARCA4-206ENST00000538456 738 ntTSL 319.72■□□□□ 0.751e-7■■□□□ 13.4
YBX3P16989 SMARCA4-218ENST00000592158 409 ntTSL 214.3□□□□□ -0.121e-7■■□□□ 13.4
YBX3P16989 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.076e-9■■□□□ 13.4
YBX3P16989 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.064e-10■■□□□ 13.4
YBX3P16989 KLHL12-203ENST00000367261 3359 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.378e-9■■□□□ 13.4
YBX3P16989 MAPRE2-204ENST00000538170 4093 ntTSL 2 BASIC11.52□□□□□ -0.574e-10■■□□□ 13.4
YBX3P16989 KLHL12-201ENST00000367258 1033 ntTSL 58.33□□□□□ -1.088e-9■■□□□ 13.4
YBX3P16989 MAPRE2-203ENST00000436190 4323 ntTSL 2 BASIC7.54□□□□□ -1.24e-10■■□□□ 13.4
YBX3P16989 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC7.36□□□□□ -1.234e-10■■□□□ 13.4
YBX3P16989 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.86□□□□□ -1.474e-10■■□□□ 13.4
YBX3P16989 RNF10-215ENST00000542207 548 ntTSL 410.51□□□□□ -0.733e-6■■□□□ 13.4
YBX3P16989 TBL3-201ENST00000332704 2091 ntAPPRIS ALT2 TSL 1 (best)19.67■□□□□ 0.748e-7■■□□□ 13.4
YBX3P16989 TBL3-206ENST00000569628 2594 ntTSL 216.63■□□□□ 0.258e-7■■□□□ 13.4
YBX3P16989 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.28e-7■■□□□ 13.4
YBX3P16989 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC15.82■□□□□ 0.128e-7■■□□□ 13.4
YBX3P16989 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC24.65■■□□□ 1.544e-6■■□□□ 13.4
YBX3P16989 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.474e-6■■□□□ 13.4
YBX3P16989 RPUSD3-203ENST00000423108 756 ntTSL 215.49■□□□□ 0.079e-16■■□□□ 13.4
YBX3P16989 RPUSD3-212ENST00000466141 996 ntTSL 210□□□□□ -0.819e-16■■□□□ 13.4
YBX3P16989 AP1B1-207ENST00000421126 1908 ntTSL 515.37■□□□□ 0.058e-8■■□□□ 13.4
YBX3P16989 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.18e-8■■□□□ 13.4
YBX3P16989 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC14.1□□□□□ -0.158e-8■■□□□ 13.4
YBX3P16989 AP1B1-202ENST00000357586 4176 ntTSL 1 (best) BASIC13.87□□□□□ -0.198e-8■■□□□ 13.4
YBX3P16989 AP1B1-205ENST00000415447 2838 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.478e-8■■□□□ 13.4
YBX3P16989 AP1B1-203ENST00000402502 2935 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.578e-8■■□□□ 13.4
YBX3P16989 AP1B1-204ENST00000405198 3838 ntTSL 5 BASIC11.21□□□□□ -0.618e-8■■□□□ 13.4
YBX3P16989 TCP1-204ENST00000467544 658 ntTSL 28.52□□□□□ -1.053e-9■■□□□ 13.4
YBX3P16989 NCOA4-203ENST00000580070 1755 ntTSL 2 BASIC14.41□□□□□ -0.12e-9■■□□□ 13.4
YBX3P16989 NCOA4-202ENST00000579039 2211 ntTSL 2 BASIC11.5□□□□□ -0.572e-9■■□□□ 13.4
YBX3P16989 NCOA4-201ENST00000578454 2307 ntTSL 1 (best) BASIC9.87□□□□□ -0.832e-9■■□□□ 13.4
YBX3P16989 NCOA4-206ENST00000585056 2124 ntTSL 2 BASIC9.62□□□□□ -0.872e-9■■□□□ 13.4
YBX3P16989 NCOA4-205ENST00000583565 2371 ntAPPRIS P1 TSL 2 BASIC7.95□□□□□ -1.142e-9■■□□□ 13.4
YBX3P16989 UQCRQ-204ENST00000480372 509 ntTSL 222.46■■□□□ 1.192e-16■■□□□ 13.4
Retrieved 100 of 29,075 protein–RNA pairs in 279.1 ms