Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
HMGB1P09429 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGB1P09429 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC21.8■■□□□ 1.08
HMGB1P09429 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
HMGB1P09429 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC21.79■■□□□ 1.08
HMGB1P09429 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
HMGB1P09429 AC135776.1-201ENST00000319817 2481 ntBASIC21.79■■□□□ 1.08
HMGB1P09429 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HMGB1P09429 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC21.79■■□□□ 1.08
HMGB1P09429 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC21.79■■□□□ 1.08
HMGB1P09429 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HMGB1P09429 AP000523.1-201ENST00000398242 1049 ntBASIC21.79■■□□□ 1.08
HMGB1P09429 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC21.79■■□□□ 1.08
HMGB1P09429 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC21.79■■□□□ 1.08
HMGB1P09429 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC21.79■■□□□ 1.08
HMGB1P09429 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC21.79■■□□□ 1.08
HMGB1P09429 GXYLT1P3-201ENST00000453058 1193 ntBASIC21.79■■□□□ 1.08
HMGB1P09429 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC21.79■■□□□ 1.08
HMGB1P09429 NT5C-210ENST00000582160 860 ntTSL 2 BASIC21.79■■□□□ 1.08
HMGB1P09429 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC21.79■■□□□ 1.08
HMGB1P09429 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HMGB1P09429 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC21.79■■□□□ 1.08
HMGB1P09429 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
HMGB1P09429 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC21.79■■□□□ 1.08
HMGB1P09429 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC21.79■■□□□ 1.08
HMGB1P09429 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HMGB1P09429 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC21.79■■□□□ 1.08
HMGB1P09429 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC21.79■■□□□ 1.08
HMGB1P09429 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC21.79■■□□□ 1.08
HMGB1P09429 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
HMGB1P09429 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC21.79■■□□□ 1.08
HMGB1P09429 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HMGB1P09429 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
HMGB1P09429 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HMGB1P09429 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HMGB1P09429 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HMGB1P09429 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HMGB1P09429 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
HMGB1P09429 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC21.78■■□□□ 1.08
HMGB1P09429 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HMGB1P09429 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HMGB1P09429 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HMGB1P09429 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
HMGB1P09429 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC21.78■■□□□ 1.08
HMGB1P09429 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HMGB1P09429 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC21.78■■□□□ 1.08
HMGB1P09429 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
HMGB1P09429 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HMGB1P09429 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HMGB1P09429 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
HMGB1P09429 AC009947.2-201ENST00000444014 672 ntBASIC21.78■■□□□ 1.08
HMGB1P09429 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HMGB1P09429 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC21.78■■□□□ 1.08
HMGB1P09429 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC21.78■■□□□ 1.08
HMGB1P09429 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
HMGB1P09429 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC21.78■■□□□ 1.08
HMGB1P09429 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
HMGB1P09429 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HMGB1P09429 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC21.78■■□□□ 1.08
HMGB1P09429 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HMGB1P09429 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
HMGB1P09429 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HMGB1P09429 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HMGB1P09429 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HMGB1P09429 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HMGB1P09429 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
HMGB1P09429 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
HMGB1P09429 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HMGB1P09429 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HMGB1P09429 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
HMGB1P09429 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
HMGB1P09429 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC21.77■■□□□ 1.08
HMGB1P09429 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
HMGB1P09429 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
HMGB1P09429 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC21.77■■□□□ 1.08
HMGB1P09429 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HMGB1P09429 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HMGB1P09429 GAD2-202ENST00000376248 680 ntTSL 5 BASIC21.77■■□□□ 1.08
HMGB1P09429 ECEL1P3-201ENST00000427961 737 ntBASIC21.77■■□□□ 1.08
HMGB1P09429 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC21.77■■□□□ 1.08
HMGB1P09429 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC21.77■■□□□ 1.08
HMGB1P09429 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC21.77■■□□□ 1.08
HMGB1P09429 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
HMGB1P09429 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
HMGB1P09429 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HMGB1P09429 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC21.77■■□□□ 1.08
HMGB1P09429 UROS-202ENST00000368778 1556 ntTSL 2 BASIC21.77■■□□□ 1.08
HMGB1P09429 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
HMGB1P09429 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
HMGB1P09429 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HMGB1P09429 ESPNP-201ENST00000270691 2015 ntBASIC21.77■■□□□ 1.07
HMGB1P09429 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
HMGB1P09429 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC21.77■■□□□ 1.07
HMGB1P09429 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.07
HMGB1P09429 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
HMGB1P09429 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
HMGB1P09429 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
HMGB1P09429 AC020763.4-201ENST00000623414 4170 ntBASIC21.77■■□□□ 1.07
HMGB1P09429 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC21.76■■□□□ 1.07
HMGB1P09429 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms