Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL1A1P02452 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL1A1P02452 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC22.2■■□□□ 1.14
COL1A1P02452 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL1A1P02452 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC22.2■■□□□ 1.14
COL1A1P02452 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL1A1P02452 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC22.2■■□□□ 1.14
COL1A1P02452 AC138894.3-201ENST00000603787 634 ntBASIC22.2■■□□□ 1.14
COL1A1P02452 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL1A1P02452 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
COL1A1P02452 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
COL1A1P02452 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC22.19■■□□□ 1.14
COL1A1P02452 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
COL1A1P02452 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
COL1A1P02452 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
COL1A1P02452 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC22.19■■□□□ 1.14
COL1A1P02452 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
COL1A1P02452 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
COL1A1P02452 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
COL1A1P02452 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
COL1A1P02452 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC22.19■■□□□ 1.14
COL1A1P02452 TSPY12P-201ENST00000421279 868 ntBASIC22.19■■□□□ 1.14
COL1A1P02452 IGHV3-47-201ENST00000425060 335 ntBASIC22.19■■□□□ 1.14
COL1A1P02452 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
COL1A1P02452 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC22.19■■□□□ 1.14
COL1A1P02452 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
COL1A1P02452 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC22.19■■□□□ 1.14
COL1A1P02452 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
COL1A1P02452 Z69720.1-201ENST00000601483 472 ntBASIC22.19■■□□□ 1.14
COL1A1P02452 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC22.19■■□□□ 1.14
COL1A1P02452 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
COL1A1P02452 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
COL1A1P02452 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC22.19■■□□□ 1.14
COL1A1P02452 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
COL1A1P02452 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC22.19■■□□□ 1.14
COL1A1P02452 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
COL1A1P02452 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC22.18■■□□□ 1.14
COL1A1P02452 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
COL1A1P02452 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
COL1A1P02452 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
COL1A1P02452 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC22.18■■□□□ 1.14
COL1A1P02452 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC22.18■■□□□ 1.14
COL1A1P02452 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
COL1A1P02452 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC22.18■■□□□ 1.14
COL1A1P02452 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC22.18■■□□□ 1.14
COL1A1P02452 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
COL1A1P02452 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
COL1A1P02452 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC22.18■■□□□ 1.14
COL1A1P02452 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
COL1A1P02452 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
COL1A1P02452 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC22.18■■□□□ 1.14
COL1A1P02452 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
COL1A1P02452 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC22.18■■□□□ 1.14
COL1A1P02452 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
COL1A1P02452 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
COL1A1P02452 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
COL1A1P02452 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
COL1A1P02452 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC22.17■■□□□ 1.14
COL1A1P02452 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
COL1A1P02452 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
COL1A1P02452 CDV3-207ENST00000508481 661 ntTSL 3 BASIC22.17■■□□□ 1.14
COL1A1P02452 AL353801.3-201ENST00000609898 542 ntBASIC22.17■■□□□ 1.14
COL1A1P02452 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
COL1A1P02452 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
COL1A1P02452 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
COL1A1P02452 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
COL1A1P02452 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
COL1A1P02452 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC22.17■■□□□ 1.14
COL1A1P02452 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
COL1A1P02452 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC22.17■■□□□ 1.14
COL1A1P02452 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
COL1A1P02452 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
COL1A1P02452 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC22.16■■□□□ 1.14
COL1A1P02452 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL1A1P02452 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC22.16■■□□□ 1.14
COL1A1P02452 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL1A1P02452 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL1A1P02452 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL1A1P02452 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC22.16■■□□□ 1.14
COL1A1P02452 AC124864.1-201ENST00000623408 392 ntBASIC22.16■■□□□ 1.14
COL1A1P02452 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC22.16■■□□□ 1.14
COL1A1P02452 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL1A1P02452 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC22.16■■□□□ 1.14
COL1A1P02452 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC22.16■■□□□ 1.14
COL1A1P02452 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC22.16■■□□□ 1.14
COL1A1P02452 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL1A1P02452 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL1A1P02452 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL1A1P02452 AKR1C7P-201ENST00000305623 895 ntBASIC22.15■■□□□ 1.14
COL1A1P02452 KRT16P4-201ENST00000453883 522 ntBASIC22.15■■□□□ 1.14
COL1A1P02452 AC113404.2-201ENST00000507884 177 ntBASIC22.15■■□□□ 1.14
COL1A1P02452 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL1A1P02452 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC22.15■■□□□ 1.14
COL1A1P02452 CALM3-211ENST00000598871 561 ntTSL 4 BASIC22.15■■□□□ 1.14
COL1A1P02452 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC22.15■■□□□ 1.14
COL1A1P02452 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
COL1A1P02452 VPS51-217ENST00000639871 243 ntTSL 5 BASIC22.15■■□□□ 1.14
COL1A1P02452 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL1A1P02452 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
COL1A1P02452 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC22.15■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms