Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.2■□□□□ 0.34
PRKNO60260 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PRKNO60260 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.2■□□□□ 0.34
PRKNO60260 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.2■□□□□ 0.34
PRKNO60260 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.2■□□□□ 0.34
PRKNO60260 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PRKNO60260 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.19■□□□□ 0.34
PRKNO60260 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
PRKNO60260 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PRKNO60260 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
PRKNO60260 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
PRKNO60260 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PRKNO60260 ISCU-203ENST00000431221 799 ntTSL 2 BASIC17.19■□□□□ 0.34
PRKNO60260 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.19■□□□□ 0.34
PRKNO60260 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.19■□□□□ 0.34
PRKNO60260 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.19■□□□□ 0.34
PRKNO60260 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.19■□□□□ 0.34
PRKNO60260 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.19■□□□□ 0.34
PRKNO60260 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
PRKNO60260 AC083849.1-201ENST00000615227 514 ntBASIC17.19■□□□□ 0.34
PRKNO60260 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PRKNO60260 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PRKNO60260 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PRKNO60260 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
PRKNO60260 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.19■□□□□ 0.34
PRKNO60260 WIZP1-201ENST00000531444 2299 ntBASIC17.19■□□□□ 0.34
PRKNO60260 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.19■□□□□ 0.34
PRKNO60260 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PRKNO60260 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.19■□□□□ 0.34
PRKNO60260 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.19■□□□□ 0.34
PRKNO60260 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PRKNO60260 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PRKNO60260 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PRKNO60260 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PRKNO60260 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
PRKNO60260 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
PRKNO60260 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
PRKNO60260 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PRKNO60260 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
PRKNO60260 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PRKNO60260 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PRKNO60260 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
PRKNO60260 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
PRKNO60260 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
PRKNO60260 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.18■□□□□ 0.34
PRKNO60260 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PRKNO60260 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PRKNO60260 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.18■□□□□ 0.34
PRKNO60260 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PRKNO60260 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.18■□□□□ 0.34
PRKNO60260 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PRKNO60260 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PRKNO60260 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
PRKNO60260 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.18■□□□□ 0.34
PRKNO60260 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PRKNO60260 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PRKNO60260 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.18■□□□□ 0.34
PRKNO60260 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC17.18■□□□□ 0.34
PRKNO60260 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PRKNO60260 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.18■□□□□ 0.34
PRKNO60260 MIR3917-201ENST00000580971 93 ntBASIC17.18■□□□□ 0.34
PRKNO60260 AC010240.3-201ENST00000607688 395 ntBASIC17.18■□□□□ 0.34
PRKNO60260 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
PRKNO60260 AC079602.3-201ENST00000623931 403 ntBASIC17.18■□□□□ 0.34
PRKNO60260 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
PRKNO60260 KRT8P7-201ENST00000533003 1432 ntBASIC17.18■□□□□ 0.34
PRKNO60260 KRT8P50-201ENST00000562022 1438 ntBASIC17.18■□□□□ 0.34
PRKNO60260 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
PRKNO60260 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PRKNO60260 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PRKNO60260 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PRKNO60260 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PRKNO60260 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.18■□□□□ 0.34
PRKNO60260 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
PRKNO60260 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PRKNO60260 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
PRKNO60260 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
PRKNO60260 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.18■□□□□ 0.34
PRKNO60260 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.17■□□□□ 0.34
PRKNO60260 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.17■□□□□ 0.34
PRKNO60260 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.17■□□□□ 0.34
PRKNO60260 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PRKNO60260 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PRKNO60260 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.17■□□□□ 0.34
PRKNO60260 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.17■□□□□ 0.34
PRKNO60260 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.17■□□□□ 0.34
PRKNO60260 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PRKNO60260 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.17■□□□□ 0.34
PRKNO60260 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
PRKNO60260 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PRKNO60260 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
PRKNO60260 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.17■□□□□ 0.34
PRKNO60260 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.17■□□□□ 0.34
PRKNO60260 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.17■□□□□ 0.34
PRKNO60260 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
PRKNO60260 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PRKNO60260 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PRKNO60260 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PRKNO60260 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PRKNO60260 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms