Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
CDH9Q9ULB4 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CDH9Q9ULB4 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC19.54■□□□□ 0.72
CDH9Q9ULB4 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CDH9Q9ULB4 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19.53■□□□□ 0.72
CDH9Q9ULB4 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC19.53■□□□□ 0.72
CDH9Q9ULB4 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
CDH9Q9ULB4 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
CDH9Q9ULB4 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.53■□□□□ 0.72
CDH9Q9ULB4 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.53■□□□□ 0.72
CDH9Q9ULB4 AP000974.1-201ENST00000623909 2387 ntBASIC19.53■□□□□ 0.72
CDH9Q9ULB4 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CDH9Q9ULB4 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CDH9Q9ULB4 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CDH9Q9ULB4 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC19.53■□□□□ 0.72
CDH9Q9ULB4 AC011498.5-201ENST00000592027 486 ntBASIC19.53■□□□□ 0.72
CDH9Q9ULB4 AC024563.2-201ENST00000603282 481 ntBASIC19.53■□□□□ 0.72
CDH9Q9ULB4 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.53■□□□□ 0.72
CDH9Q9ULB4 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC19.53■□□□□ 0.72
CDH9Q9ULB4 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CDH9Q9ULB4 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CDH9Q9ULB4 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
CDH9Q9ULB4 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CDH9Q9ULB4 UROS-202ENST00000368778 1556 ntTSL 2 BASIC19.53■□□□□ 0.72
CDH9Q9ULB4 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDH9Q9ULB4 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CDH9Q9ULB4 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CDH9Q9ULB4 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CDH9Q9ULB4 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDH9Q9ULB4 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CDH9Q9ULB4 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC19.52■□□□□ 0.72
CDH9Q9ULB4 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
CDH9Q9ULB4 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC19.52■□□□□ 0.72
CDH9Q9ULB4 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC19.52■□□□□ 0.72
CDH9Q9ULB4 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDH9Q9ULB4 KRT18P48-201ENST00000434763 852 ntBASIC19.52■□□□□ 0.72
CDH9Q9ULB4 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CDH9Q9ULB4 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.52■□□□□ 0.72
CDH9Q9ULB4 AC069148.1-201ENST00000608741 768 ntBASIC19.52■□□□□ 0.72
CDH9Q9ULB4 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDH9Q9ULB4 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC19.52■□□□□ 0.72
CDH9Q9ULB4 AC018445.3-201ENST00000624177 1945 ntBASIC19.52■□□□□ 0.72
CDH9Q9ULB4 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDH9Q9ULB4 AC120498.9-201ENST00000339021 3867 ntBASIC19.52■□□□□ 0.72
CDH9Q9ULB4 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
CDH9Q9ULB4 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CDH9Q9ULB4 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CDH9Q9ULB4 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.71
CDH9Q9ULB4 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
CDH9Q9ULB4 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDH9Q9ULB4 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC19.51■□□□□ 0.71
CDH9Q9ULB4 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDH9Q9ULB4 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
CDH9Q9ULB4 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDH9Q9ULB4 SNCG-201ENST00000348795 684 ntTSL 2 BASIC19.51■□□□□ 0.71
CDH9Q9ULB4 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC19.51■□□□□ 0.71
CDH9Q9ULB4 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
CDH9Q9ULB4 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC19.51■□□□□ 0.71
CDH9Q9ULB4 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC19.51■□□□□ 0.71
CDH9Q9ULB4 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC19.51■□□□□ 0.71
CDH9Q9ULB4 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CDH9Q9ULB4 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC19.51■□□□□ 0.71
CDH9Q9ULB4 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
CDH9Q9ULB4 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDH9Q9ULB4 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
CDH9Q9ULB4 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.51■□□□□ 0.71
CDH9Q9ULB4 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDH9Q9ULB4 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
CDH9Q9ULB4 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDH9Q9ULB4 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CDH9Q9ULB4 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDH9Q9ULB4 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC19.51■□□□□ 0.71
CDH9Q9ULB4 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDH9Q9ULB4 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
CDH9Q9ULB4 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDH9Q9ULB4 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDH9Q9ULB4 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDH9Q9ULB4 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CDH9Q9ULB4 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDH9Q9ULB4 AP003733.1-201ENST00000491725 852 ntBASIC19.5■□□□□ 0.71
CDH9Q9ULB4 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC19.5■□□□□ 0.71
CDH9Q9ULB4 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC19.5■□□□□ 0.71
CDH9Q9ULB4 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC19.5■□□□□ 0.71
CDH9Q9ULB4 TEN1-204ENST00000588202 862 ntTSL 3 BASIC19.5■□□□□ 0.71
CDH9Q9ULB4 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
CDH9Q9ULB4 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CDH9Q9ULB4 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDH9Q9ULB4 SDHAP2-201ENST00000455183 2001 ntBASIC19.5■□□□□ 0.71
CDH9Q9ULB4 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.5■□□□□ 0.71
CDH9Q9ULB4 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDH9Q9ULB4 ASL-204ENST00000395331 1538 ntTSL 5 BASIC19.5■□□□□ 0.71
CDH9Q9ULB4 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
CDH9Q9ULB4 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDH9Q9ULB4 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.5■□□□□ 0.71
CDH9Q9ULB4 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC19.5■□□□□ 0.71
CDH9Q9ULB4 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDH9Q9ULB4 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CDH9Q9ULB4 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.49■□□□□ 0.71
CDH9Q9ULB4 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
CDH9Q9ULB4 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms