Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
PCDH9Q9HC56 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC19.14■□□□□ 0.66
PCDH9Q9HC56 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
PCDH9Q9HC56 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
PCDH9Q9HC56 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
PCDH9Q9HC56 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.14■□□□□ 0.66
PCDH9Q9HC56 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.14■□□□□ 0.65
PCDH9Q9HC56 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PCDH9Q9HC56 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC19.14■□□□□ 0.65
PCDH9Q9HC56 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
PCDH9Q9HC56 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PCDH9Q9HC56 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
PCDH9Q9HC56 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PCDH9Q9HC56 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PCDH9Q9HC56 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PCDH9Q9HC56 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PCDH9Q9HC56 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PCDH9Q9HC56 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
PCDH9Q9HC56 AC135776.1-201ENST00000319817 2481 ntBASIC19.14■□□□□ 0.65
PCDH9Q9HC56 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PCDH9Q9HC56 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PCDH9Q9HC56 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PCDH9Q9HC56 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC19.14■□□□□ 0.65
PCDH9Q9HC56 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PCDH9Q9HC56 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC19.14■□□□□ 0.65
PCDH9Q9HC56 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
PCDH9Q9HC56 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC19.14■□□□□ 0.65
PCDH9Q9HC56 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDH9Q9HC56 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PCDH9Q9HC56 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC19.13■□□□□ 0.65
PCDH9Q9HC56 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PCDH9Q9HC56 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDH9Q9HC56 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
PCDH9Q9HC56 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDH9Q9HC56 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC19.13■□□□□ 0.65
PCDH9Q9HC56 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC19.13■□□□□ 0.65
PCDH9Q9HC56 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.13■□□□□ 0.65
PCDH9Q9HC56 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PCDH9Q9HC56 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC19.13■□□□□ 0.65
PCDH9Q9HC56 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PCDH9Q9HC56 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC19.13■□□□□ 0.65
PCDH9Q9HC56 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC19.13■□□□□ 0.65
PCDH9Q9HC56 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDH9Q9HC56 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDH9Q9HC56 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
PCDH9Q9HC56 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDH9Q9HC56 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC19.13■□□□□ 0.65
PCDH9Q9HC56 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDH9Q9HC56 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PCDH9Q9HC56 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
PCDH9Q9HC56 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PCDH9Q9HC56 PCDHB18P-201ENST00000524813 2368 ntBASIC19.12■□□□□ 0.65
PCDH9Q9HC56 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.12■□□□□ 0.65
PCDH9Q9HC56 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.12■□□□□ 0.65
PCDH9Q9HC56 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.12■□□□□ 0.65
PCDH9Q9HC56 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
PCDH9Q9HC56 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PCDH9Q9HC56 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PCDH9Q9HC56 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PCDH9Q9HC56 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
PCDH9Q9HC56 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
PCDH9Q9HC56 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.12■□□□□ 0.65
PCDH9Q9HC56 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC19.12■□□□□ 0.65
PCDH9Q9HC56 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.12■□□□□ 0.65
PCDH9Q9HC56 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
PCDH9Q9HC56 KRT18P41-201ENST00000518924 1277 ntBASIC19.12■□□□□ 0.65
PCDH9Q9HC56 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC19.12■□□□□ 0.65
PCDH9Q9HC56 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC19.12■□□□□ 0.65
PCDH9Q9HC56 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.12■□□□□ 0.65
PCDH9Q9HC56 GLDC-219ENST00000640208 420 ntTSL 2 BASIC19.12■□□□□ 0.65
PCDH9Q9HC56 AC008556.1-201ENST00000610908 2040 ntBASIC19.12■□□□□ 0.65
PCDH9Q9HC56 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDH9Q9HC56 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDH9Q9HC56 AL109659.2-201ENST00000606809 1674 ntBASIC19.11■□□□□ 0.65
PCDH9Q9HC56 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC19.11■□□□□ 0.65
PCDH9Q9HC56 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PCDH9Q9HC56 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
PCDH9Q9HC56 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDH9Q9HC56 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC19.11■□□□□ 0.65
PCDH9Q9HC56 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDH9Q9HC56 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.11■□□□□ 0.65
PCDH9Q9HC56 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PCDH9Q9HC56 MMP23A-201ENST00000234610 1017 ntBASIC19.11■□□□□ 0.65
PCDH9Q9HC56 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PCDH9Q9HC56 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PCDH9Q9HC56 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDH9Q9HC56 BX088651.1-201ENST00000540551 451 ntBASIC19.11■□□□□ 0.65
PCDH9Q9HC56 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC19.11■□□□□ 0.65
PCDH9Q9HC56 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC19.11■□□□□ 0.65
PCDH9Q9HC56 AC008764.6-201ENST00000595909 2069 ntBASIC19.11■□□□□ 0.65
PCDH9Q9HC56 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDH9Q9HC56 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PCDH9Q9HC56 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDH9Q9HC56 GATB-213ENST00000515812 1893 ntTSL 5 BASIC19.11■□□□□ 0.65
PCDH9Q9HC56 AC093677.2-201ENST00000600169 1863 ntBASIC19.11■□□□□ 0.65
PCDH9Q9HC56 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDH9Q9HC56 MYLKP1-201ENST00000509077 1580 ntBASIC19.1■□□□□ 0.65
PCDH9Q9HC56 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PCDH9Q9HC56 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PCDH9Q9HC56 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms