Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
VPS35Q96QK1 AC010240.3-201ENST00000607688 395 ntBASIC18.37■□□□□ 0.53
VPS35Q96QK1 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS35Q96QK1 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
VPS35Q96QK1 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS35Q96QK1 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.37■□□□□ 0.53
VPS35Q96QK1 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.37■□□□□ 0.53
VPS35Q96QK1 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
VPS35Q96QK1 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS35Q96QK1 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
VPS35Q96QK1 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS35Q96QK1 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS35Q96QK1 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS35Q96QK1 AC020763.4-201ENST00000623414 4170 ntBASIC18.37■□□□□ 0.53
VPS35Q96QK1 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS35Q96QK1 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS35Q96QK1 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.37■□□□□ 0.53
VPS35Q96QK1 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS35Q96QK1 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VPS35Q96QK1 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS35Q96QK1 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS35Q96QK1 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS35Q96QK1 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
VPS35Q96QK1 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VPS35Q96QK1 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.36■□□□□ 0.53
VPS35Q96QK1 STARP1-201ENST00000397973 869 ntBASIC18.36■□□□□ 0.53
VPS35Q96QK1 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS35Q96QK1 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18.36■□□□□ 0.53
VPS35Q96QK1 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC18.36■□□□□ 0.53
VPS35Q96QK1 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS35Q96QK1 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.36■□□□□ 0.53
VPS35Q96QK1 AC022616.7-201ENST00000525383 220 ntBASIC18.36■□□□□ 0.53
VPS35Q96QK1 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.36■□□□□ 0.53
VPS35Q96QK1 AL049597.2-201ENST00000565575 961 ntBASIC18.36■□□□□ 0.53
VPS35Q96QK1 LINC01238-205ENST00000567549 1107 ntBASIC18.36■□□□□ 0.53
VPS35Q96QK1 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VPS35Q96QK1 MIR3917-201ENST00000580971 93 ntBASIC18.36■□□□□ 0.53
VPS35Q96QK1 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
VPS35Q96QK1 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
VPS35Q96QK1 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS35Q96QK1 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS35Q96QK1 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
VPS35Q96QK1 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
VPS35Q96QK1 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS35Q96QK1 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS35Q96QK1 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
VPS35Q96QK1 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS35Q96QK1 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
VPS35Q96QK1 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS35Q96QK1 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS35Q96QK1 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.35■□□□□ 0.53
VPS35Q96QK1 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS35Q96QK1 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
VPS35Q96QK1 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS35Q96QK1 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS35Q96QK1 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS35Q96QK1 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS35Q96QK1 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
VPS35Q96QK1 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS35Q96QK1 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS35Q96QK1 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS35Q96QK1 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS35Q96QK1 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS35Q96QK1 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC18.35■□□□□ 0.53
VPS35Q96QK1 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS35Q96QK1 AC009065.1-201ENST00000564055 1225 ntBASIC18.35■□□□□ 0.53
VPS35Q96QK1 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.35■□□□□ 0.53
VPS35Q96QK1 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.35■□□□□ 0.53
VPS35Q96QK1 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS35Q96QK1 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS35Q96QK1 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS35Q96QK1 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS35Q96QK1 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS35Q96QK1 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS35Q96QK1 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS35Q96QK1 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.35■□□□□ 0.53
VPS35Q96QK1 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS35Q96QK1 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS35Q96QK1 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS35Q96QK1 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS35Q96QK1 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
VPS35Q96QK1 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS35Q96QK1 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS35Q96QK1 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS35Q96QK1 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS35Q96QK1 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS35Q96QK1 MYLKP1-201ENST00000509077 1580 ntBASIC18.34■□□□□ 0.53
VPS35Q96QK1 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS35Q96QK1 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
VPS35Q96QK1 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS35Q96QK1 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
VPS35Q96QK1 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
VPS35Q96QK1 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS35Q96QK1 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS35Q96QK1 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC18.34■□□□□ 0.53
VPS35Q96QK1 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC18.34■□□□□ 0.53
VPS35Q96QK1 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS35Q96QK1 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS35Q96QK1 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.34■□□□□ 0.53
VPS35Q96QK1 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms