Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 AL121956.5-201ENST00000625261 221 ntBASIC18.99■□□□□ 0.63
SKA1Q96BD8 AP000550.4-202ENST00000639755 178 ntBASIC18.99■□□□□ 0.63
SKA1Q96BD8 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.99■□□□□ 0.63
SKA1Q96BD8 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.99■□□□□ 0.63
SKA1Q96BD8 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SKA1Q96BD8 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SKA1Q96BD8 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
SKA1Q96BD8 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SKA1Q96BD8 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
SKA1Q96BD8 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SKA1Q96BD8 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SKA1Q96BD8 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SKA1Q96BD8 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SKA1Q96BD8 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.98■□□□□ 0.63
SKA1Q96BD8 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SKA1Q96BD8 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.98■□□□□ 0.63
SKA1Q96BD8 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SKA1Q96BD8 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SKA1Q96BD8 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SKA1Q96BD8 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SKA1Q96BD8 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SKA1Q96BD8 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SKA1Q96BD8 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC18.98■□□□□ 0.63
SKA1Q96BD8 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC18.98■□□□□ 0.63
SKA1Q96BD8 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SKA1Q96BD8 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.98■□□□□ 0.63
SKA1Q96BD8 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SKA1Q96BD8 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SKA1Q96BD8 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.98■□□□□ 0.63
SKA1Q96BD8 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SKA1Q96BD8 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
SKA1Q96BD8 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.98■□□□□ 0.63
SKA1Q96BD8 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.98■□□□□ 0.63
SKA1Q96BD8 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SKA1Q96BD8 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SKA1Q96BD8 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SKA1Q96BD8 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SKA1Q96BD8 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SKA1Q96BD8 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SKA1Q96BD8 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.97■□□□□ 0.63
SKA1Q96BD8 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.97■□□□□ 0.63
SKA1Q96BD8 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
SKA1Q96BD8 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SKA1Q96BD8 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SKA1Q96BD8 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
SKA1Q96BD8 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SKA1Q96BD8 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SKA1Q96BD8 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.97■□□□□ 0.63
SKA1Q96BD8 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SKA1Q96BD8 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.97■□□□□ 0.63
SKA1Q96BD8 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SKA1Q96BD8 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SKA1Q96BD8 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SKA1Q96BD8 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SKA1Q96BD8 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SKA1Q96BD8 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SKA1Q96BD8 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC18.97■□□□□ 0.63
SKA1Q96BD8 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC18.97■□□□□ 0.63
SKA1Q96BD8 AP003041.3-201ENST00000527151 707 ntBASIC18.97■□□□□ 0.63
SKA1Q96BD8 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.97■□□□□ 0.63
SKA1Q96BD8 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC18.97■□□□□ 0.63
SKA1Q96BD8 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.97■□□□□ 0.63
SKA1Q96BD8 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC18.97■□□□□ 0.63
SKA1Q96BD8 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SKA1Q96BD8 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC18.97■□□□□ 0.63
SKA1Q96BD8 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
SKA1Q96BD8 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SKA1Q96BD8 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.97■□□□□ 0.63
SKA1Q96BD8 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SKA1Q96BD8 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.97■□□□□ 0.63
SKA1Q96BD8 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
SKA1Q96BD8 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SKA1Q96BD8 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.97■□□□□ 0.63
SKA1Q96BD8 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SKA1Q96BD8 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SKA1Q96BD8 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.97■□□□□ 0.63
SKA1Q96BD8 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SKA1Q96BD8 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.97■□□□□ 0.63
SKA1Q96BD8 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SKA1Q96BD8 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
SKA1Q96BD8 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.96■□□□□ 0.63
SKA1Q96BD8 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.96■□□□□ 0.63
SKA1Q96BD8 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SKA1Q96BD8 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.96■□□□□ 0.63
SKA1Q96BD8 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
SKA1Q96BD8 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.96■□□□□ 0.63
SKA1Q96BD8 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.96■□□□□ 0.63
SKA1Q96BD8 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.96■□□□□ 0.63
SKA1Q96BD8 KRT8P41-201ENST00000533985 1514 ntBASIC18.96■□□□□ 0.63
SKA1Q96BD8 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.96■□□□□ 0.63
SKA1Q96BD8 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
SKA1Q96BD8 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
SKA1Q96BD8 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SKA1Q96BD8 AL512353.2-201ENST00000448759 1962 ntBASIC18.96■□□□□ 0.63
SKA1Q96BD8 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
SKA1Q96BD8 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SKA1Q96BD8 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC18.96■□□□□ 0.63
SKA1Q96BD8 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SKA1Q96BD8 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SKA1Q96BD8 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms