Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ATG4AQ8WYN0 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
ATG4AQ8WYN0 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.21■□□□□ 0.67
ATG4AQ8WYN0 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ATG4AQ8WYN0 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ATG4AQ8WYN0 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC19.21■□□□□ 0.67
ATG4AQ8WYN0 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC19.21■□□□□ 0.67
ATG4AQ8WYN0 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.21■□□□□ 0.67
ATG4AQ8WYN0 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
ATG4AQ8WYN0 AP000692.2-201ENST00000608391 879 ntBASIC19.21■□□□□ 0.67
ATG4AQ8WYN0 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC19.21■□□□□ 0.67
ATG4AQ8WYN0 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ATG4AQ8WYN0 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
ATG4AQ8WYN0 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
ATG4AQ8WYN0 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ATG4AQ8WYN0 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
ATG4AQ8WYN0 AP000997.3-201ENST00000623333 2250 ntBASIC19.21■□□□□ 0.67
ATG4AQ8WYN0 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC19.2■□□□□ 0.66
ATG4AQ8WYN0 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.19■□□□□ 0.66
ATG4AQ8WYN0 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ATG4AQ8WYN0 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ATG4AQ8WYN0 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
ATG4AQ8WYN0 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC19.19■□□□□ 0.66
ATG4AQ8WYN0 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC19.19■□□□□ 0.66
ATG4AQ8WYN0 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ATG4AQ8WYN0 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.19■□□□□ 0.66
ATG4AQ8WYN0 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC19.19■□□□□ 0.66
ATG4AQ8WYN0 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC19.19■□□□□ 0.66
ATG4AQ8WYN0 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC19.19■□□□□ 0.66
ATG4AQ8WYN0 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC19.19■□□□□ 0.66
ATG4AQ8WYN0 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
ATG4AQ8WYN0 GPAT2P1-201ENST00000444924 1672 ntBASIC19.19■□□□□ 0.66
ATG4AQ8WYN0 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ATG4AQ8WYN0 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC19.19■□□□□ 0.66
ATG4AQ8WYN0 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
ATG4AQ8WYN0 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ATG4AQ8WYN0 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ATG4AQ8WYN0 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
ATG4AQ8WYN0 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC19.19■□□□□ 0.66
ATG4AQ8WYN0 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ATG4AQ8WYN0 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 POR-209ENST00000439269 1858 ntTSL 2 BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 GATB-213ENST00000515812 1893 ntTSL 5 BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 FSCN1P1-201ENST00000568912 1481 ntBASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 AC138932.1-201ENST00000534164 6830 ntBASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 AL023284.2-201ENST00000405850 579 ntBASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
ATG4AQ8WYN0 CD177P1-201ENST00000606252 935 ntBASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms