Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD3P31249 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD3P31249 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
HOXD3P31249 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD3P31249 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD3P31249 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
HOXD3P31249 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD3P31249 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD3P31249 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD3P31249 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD3P31249 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD3P31249 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
HOXD3P31249 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD3P31249 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD3P31249 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD3P31249 MIR564-202ENST00000385049 94 ntBASIC14.32□□□□□ -0.12
HOXD3P31249 STARP1-201ENST00000397973 869 ntBASIC14.32□□□□□ -0.12
HOXD3P31249 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD3P31249 GRAMD4P1-201ENST00000435181 1110 ntBASIC14.32□□□□□ -0.12
HOXD3P31249 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC14.32□□□□□ -0.12
HOXD3P31249 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC14.32□□□□□ -0.12
HOXD3P31249 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD3P31249 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC14.32□□□□□ -0.12
HOXD3P31249 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD3P31249 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD3P31249 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC14.32□□□□□ -0.12
HOXD3P31249 FGF14-AS2-201ENST00000606448 1074 ntBASIC14.32□□□□□ -0.12
HOXD3P31249 AC112497.1-201ENST00000624824 639 ntBASIC14.32□□□□□ -0.12
HOXD3P31249 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD3P31249 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD3P31249 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC14.32□□□□□ -0.12
HOXD3P31249 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC14.32□□□□□ -0.12
HOXD3P31249 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD3P31249 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD3P31249 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD3P31249 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD3P31249 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
HOXD3P31249 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD3P31249 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD3P31249 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD3P31249 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC14.32□□□□□ -0.12
HOXD3P31249 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD3P31249 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD3P31249 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD3P31249 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC14.31□□□□□ -0.12
HOXD3P31249 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD3P31249 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD3P31249 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD3P31249 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC14.31□□□□□ -0.12
HOXD3P31249 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD3P31249 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD3P31249 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
HOXD3P31249 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD3P31249 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC14.31□□□□□ -0.12
HOXD3P31249 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
HOXD3P31249 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD3P31249 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC14.31□□□□□ -0.12
HOXD3P31249 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
HOXD3P31249 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC14.31□□□□□ -0.12
HOXD3P31249 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD3P31249 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC14.31□□□□□ -0.12
HOXD3P31249 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC14.31□□□□□ -0.12
HOXD3P31249 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC14.31□□□□□ -0.12
HOXD3P31249 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC14.31□□□□□ -0.12
HOXD3P31249 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD3P31249 HYMAI.1-201ENST00000620949 238 ntBASIC14.31□□□□□ -0.12
HOXD3P31249 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC14.31□□□□□ -0.12
HOXD3P31249 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD3P31249 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
HOXD3P31249 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC14.31□□□□□ -0.12
HOXD3P31249 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD3P31249 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD3P31249 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD3P31249 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD3P31249 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD3P31249 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD3P31249 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC14.31□□□□□ -0.12
HOXD3P31249 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD3P31249 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD3P31249 AC034236.2-201ENST00000606662 1610 ntBASIC14.3□□□□□ -0.12
HOXD3P31249 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD3P31249 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC14.3□□□□□ -0.12
HOXD3P31249 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD3P31249 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC14.3□□□□□ -0.12
HOXD3P31249 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD3P31249 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD3P31249 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD3P31249 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD3P31249 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD3P31249 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD3P31249 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD3P31249 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC14.3□□□□□ -0.12
HOXD3P31249 AL357033.4-201ENST00000617703 1807 ntBASIC14.3□□□□□ -0.12
HOXD3P31249 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD3P31249 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC14.3□□□□□ -0.12
HOXD3P31249 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD3P31249 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD3P31249 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD3P31249 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC14.3□□□□□ -0.12
HOXD3P31249 KRT18P23-201ENST00000435622 1283 ntBASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms