Protein–RNA interactions for Protein: P29350

PTPN6, Tyrosine-protein phosphatase non-receptor type 6, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6P29350 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
PTPN6P29350 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
PTPN6P29350 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PTPN6P29350 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
PTPN6P29350 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTPN6P29350 UNC93B2-201ENST00000285383 730 ntBASIC17.58■□□□□ 0.4
PTPN6P29350 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.58■□□□□ 0.4
PTPN6P29350 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.58■□□□□ 0.4
PTPN6P29350 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.58■□□□□ 0.4
PTPN6P29350 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.58■□□□□ 0.4
PTPN6P29350 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.58■□□□□ 0.4
PTPN6P29350 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.58■□□□□ 0.4
PTPN6P29350 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.58■□□□□ 0.4
PTPN6P29350 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.58■□□□□ 0.4
PTPN6P29350 ESPNP-201ENST00000270691 2015 ntBASIC17.58■□□□□ 0.4
PTPN6P29350 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
PTPN6P29350 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTPN6P29350 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
PTPN6P29350 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
PTPN6P29350 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTPN6P29350 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTPN6P29350 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTPN6P29350 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTPN6P29350 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.57■□□□□ 0.4
PTPN6P29350 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN6P29350 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
PTPN6P29350 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN6P29350 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
PTPN6P29350 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN6P29350 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.57■□□□□ 0.4
PTPN6P29350 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN6P29350 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.57■□□□□ 0.4
PTPN6P29350 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN6P29350 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN6P29350 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN6P29350 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN6P29350 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN6P29350 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
PTPN6P29350 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN6P29350 ARL16-209ENST00000573715 763 ntTSL 3 BASIC17.57■□□□□ 0.4
PTPN6P29350 ARL16-211ENST00000576135 694 ntTSL 3 BASIC17.57■□□□□ 0.4
PTPN6P29350 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN6P29350 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN6P29350 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.57■□□□□ 0.4
PTPN6P29350 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
PTPN6P29350 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN6P29350 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN6P29350 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
PTPN6P29350 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN6P29350 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.57■□□□□ 0.4
PTPN6P29350 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PTPN6P29350 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.56■□□□□ 0.4
PTPN6P29350 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN6P29350 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.56■□□□□ 0.4
PTPN6P29350 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN6P29350 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN6P29350 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.56■□□□□ 0.4
PTPN6P29350 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN6P29350 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN6P29350 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN6P29350 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.56■□□□□ 0.4
PTPN6P29350 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
PTPN6P29350 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN6P29350 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.56■□□□□ 0.4
PTPN6P29350 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC17.56■□□□□ 0.4
PTPN6P29350 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN6P29350 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.56■□□□□ 0.4
PTPN6P29350 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.56■□□□□ 0.4
PTPN6P29350 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.56■□□□□ 0.4
PTPN6P29350 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.56■□□□□ 0.4
PTPN6P29350 AP000525.1-201ENST00000608286 694 ntBASIC17.56■□□□□ 0.4
PTPN6P29350 DGCR10-201ENST00000609839 495 ntBASIC17.56■□□□□ 0.4
PTPN6P29350 AC011298.2-201ENST00000617989 482 ntBASIC17.56■□□□□ 0.4
PTPN6P29350 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.56■□□□□ 0.4
PTPN6P29350 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN6P29350 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN6P29350 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN6P29350 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.56■□□□□ 0.4
PTPN6P29350 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
PTPN6P29350 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN6P29350 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PTPN6P29350 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.56■□□□□ 0.4
PTPN6P29350 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN6P29350 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC17.55■□□□□ 0.4
PTPN6P29350 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN6P29350 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN6P29350 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.55■□□□□ 0.4
PTPN6P29350 AL109659.2-201ENST00000606809 1674 ntBASIC17.55■□□□□ 0.4
PTPN6P29350 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.55■□□□□ 0.4
PTPN6P29350 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN6P29350 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN6P29350 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.55■□□□□ 0.4
PTPN6P29350 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
PTPN6P29350 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN6P29350 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN6P29350 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN6P29350 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.55■□□□□ 0.4
PTPN6P29350 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.55■□□□□ 0.4
PTPN6P29350 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN6P29350 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms