Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
TPM1P09493 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
TPM1P09493 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC20.41■□□□□ 0.86
TPM1P09493 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
TPM1P09493 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC20.41■□□□□ 0.86
TPM1P09493 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
TPM1P09493 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TPM1P09493 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC20.41■□□□□ 0.86
TPM1P09493 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TPM1P09493 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TPM1P09493 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.41■□□□□ 0.86
TPM1P09493 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.41■□□□□ 0.86
TPM1P09493 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
TPM1P09493 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.41■□□□□ 0.86
TPM1P09493 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC20.41■□□□□ 0.86
TPM1P09493 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.41■□□□□ 0.86
TPM1P09493 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TPM1P09493 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TPM1P09493 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC20.41■□□□□ 0.86
TPM1P09493 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC20.41■□□□□ 0.86
TPM1P09493 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
TPM1P09493 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TPM1P09493 AC008764.6-201ENST00000595909 2069 ntBASIC20.41■□□□□ 0.86
TPM1P09493 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TPM1P09493 AL499627.1-201ENST00000569373 2188 ntBASIC20.41■□□□□ 0.86
TPM1P09493 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TPM1P09493 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC20.41■□□□□ 0.86
TPM1P09493 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
TPM1P09493 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TPM1P09493 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TPM1P09493 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TPM1P09493 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TPM1P09493 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TPM1P09493 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.4■□□□□ 0.86
TPM1P09493 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.4■□□□□ 0.86
TPM1P09493 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TPM1P09493 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TPM1P09493 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC20.4■□□□□ 0.86
TPM1P09493 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.4■□□□□ 0.86
TPM1P09493 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TPM1P09493 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC20.4■□□□□ 0.86
TPM1P09493 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
TPM1P09493 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC20.4■□□□□ 0.86
TPM1P09493 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20.4■□□□□ 0.86
TPM1P09493 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.4■□□□□ 0.86
TPM1P09493 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.4■□□□□ 0.86
TPM1P09493 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
TPM1P09493 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.4■□□□□ 0.86
TPM1P09493 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.4■□□□□ 0.86
TPM1P09493 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
TPM1P09493 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
TPM1P09493 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
TPM1P09493 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC20.39■□□□□ 0.86
TPM1P09493 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.86
TPM1P09493 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
TPM1P09493 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC20.39■□□□□ 0.86
TPM1P09493 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TPM1P09493 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TPM1P09493 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TPM1P09493 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TPM1P09493 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TPM1P09493 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC20.39■□□□□ 0.86
TPM1P09493 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
TPM1P09493 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
TPM1P09493 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.39■□□□□ 0.85
TPM1P09493 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.39■□□□□ 0.85
TPM1P09493 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TPM1P09493 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TPM1P09493 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.39■□□□□ 0.85
TPM1P09493 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC20.39■□□□□ 0.85
TPM1P09493 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.39■□□□□ 0.85
TPM1P09493 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.39■□□□□ 0.85
TPM1P09493 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.39■□□□□ 0.85
TPM1P09493 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
TPM1P09493 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.39■□□□□ 0.85
TPM1P09493 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.39■□□□□ 0.85
TPM1P09493 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
TPM1P09493 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TPM1P09493 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TPM1P09493 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
TPM1P09493 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC20.39■□□□□ 0.85
TPM1P09493 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
TPM1P09493 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TPM1P09493 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TPM1P09493 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TPM1P09493 SIRPAP1-201ENST00000448467 1770 ntBASIC20.39■□□□□ 0.85
TPM1P09493 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
TPM1P09493 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
TPM1P09493 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC20.38■□□□□ 0.85
TPM1P09493 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC20.38■□□□□ 0.85
TPM1P09493 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC20.38■□□□□ 0.85
TPM1P09493 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.38■□□□□ 0.85
TPM1P09493 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC20.38■□□□□ 0.85
TPM1P09493 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
TPM1P09493 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TPM1P09493 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC20.38■□□□□ 0.85
TPM1P09493 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC20.38■□□□□ 0.85
TPM1P09493 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
TPM1P09493 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TPM1P09493 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms