Protein–RNA interactions for Protein: O95983

MBD3, Methyl-CpG-binding domain protein 3, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD3O95983 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC21.24■□□□□ 0.99
MBD3O95983 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MBD3O95983 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MBD3O95983 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
MBD3O95983 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
MBD3O95983 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC21.23■□□□□ 0.99
MBD3O95983 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC21.23■□□□□ 0.99
MBD3O95983 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MBD3O95983 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MBD3O95983 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MBD3O95983 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC21.23■□□□□ 0.99
MBD3O95983 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
MBD3O95983 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MBD3O95983 MNT-208ENST00000575394 606 ntTSL 4 BASIC21.23■□□□□ 0.99
MBD3O95983 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC21.23■□□□□ 0.99
MBD3O95983 AC008687.6-201ENST00000596318 630 ntBASIC21.23■□□□□ 0.99
MBD3O95983 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC21.23■□□□□ 0.99
MBD3O95983 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MBD3O95983 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
MBD3O95983 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MBD3O95983 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MBD3O95983 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MBD3O95983 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC21.23■□□□□ 0.99
MBD3O95983 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
MBD3O95983 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC21.23■□□□□ 0.99
MBD3O95983 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC21.23■□□□□ 0.99
MBD3O95983 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MBD3O95983 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
MBD3O95983 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MBD3O95983 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MBD3O95983 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC21.22■□□□□ 0.99
MBD3O95983 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
MBD3O95983 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
MBD3O95983 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
MBD3O95983 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MBD3O95983 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MBD3O95983 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC21.22■□□□□ 0.99
MBD3O95983 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MBD3O95983 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
MBD3O95983 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
MBD3O95983 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC21.22■□□□□ 0.99
MBD3O95983 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
MBD3O95983 METTL15-202ENST00000403099 795 ntTSL 5 BASIC21.22■□□□□ 0.99
MBD3O95983 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC21.22■□□□□ 0.99
MBD3O95983 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC21.22■□□□□ 0.99
MBD3O95983 KRT18P41-201ENST00000518924 1277 ntBASIC21.22■□□□□ 0.99
MBD3O95983 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC21.22■□□□□ 0.99
MBD3O95983 KLF2-202ENST00000592003 564 ntTSL 3 BASIC21.22■□□□□ 0.99
MBD3O95983 AL096828.2-201ENST00000567259 1965 ntBASIC21.22■□□□□ 0.99
MBD3O95983 STK4-201ENST00000372801 2038 ntTSL 2 BASIC21.22■□□□□ 0.99
MBD3O95983 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
MBD3O95983 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MBD3O95983 HTR7P1-201ENST00000538670 1336 ntBASIC21.22■□□□□ 0.99
MBD3O95983 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC21.22■□□□□ 0.99
MBD3O95983 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC21.22■□□□□ 0.99
MBD3O95983 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC21.22■□□□□ 0.99
MBD3O95983 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC21.22■□□□□ 0.99
MBD3O95983 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC21.22■□□□□ 0.99
MBD3O95983 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
MBD3O95983 KRT8P11-201ENST00000409686 1436 ntBASIC21.21■□□□□ 0.99
MBD3O95983 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
MBD3O95983 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MBD3O95983 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MBD3O95983 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MBD3O95983 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MBD3O95983 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC21.21■□□□□ 0.99
MBD3O95983 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MBD3O95983 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MBD3O95983 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MBD3O95983 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
MBD3O95983 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MBD3O95983 MIR663A-201ENST00000385250 93 ntBASIC21.21■□□□□ 0.99
MBD3O95983 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
MBD3O95983 Z85996.1-201ENST00000494644 937 ntBASIC21.21■□□□□ 0.99
MBD3O95983 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC21.21■□□□□ 0.99
MBD3O95983 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MBD3O95983 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.21■□□□□ 0.99
MBD3O95983 SOX15-203ENST00000570788 1093 ntBASIC21.21■□□□□ 0.99
MBD3O95983 AC073111.5-205ENST00000641717 521 ntBASIC21.21■□□□□ 0.99
MBD3O95983 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
MBD3O95983 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MBD3O95983 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
MBD3O95983 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MBD3O95983 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MBD3O95983 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC21.21■□□□□ 0.99
MBD3O95983 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MBD3O95983 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC21.21■□□□□ 0.99
MBD3O95983 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC21.21■□□□□ 0.99
MBD3O95983 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC21.21■□□□□ 0.99
MBD3O95983 HR-201ENST00000312841 5351 ntTSL 5 BASIC21.21■□□□□ 0.99
MBD3O95983 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MBD3O95983 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC21.21■□□□□ 0.99
MBD3O95983 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
MBD3O95983 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MBD3O95983 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
MBD3O95983 AC080080.1-201ENST00000625121 2420 ntBASIC21.2■□□□□ 0.99
MBD3O95983 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MBD3O95983 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
MBD3O95983 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
MBD3O95983 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms