Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4BO75351 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4BO75351 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4BO75351 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4BO75351 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4BO75351 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4BO75351 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4BO75351 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.18■□□□□ 0.5
VPS4BO75351 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.18■□□□□ 0.5
VPS4BO75351 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS4BO75351 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.18■□□□□ 0.5
VPS4BO75351 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.18■□□□□ 0.5
VPS4BO75351 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS4BO75351 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS4BO75351 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS4BO75351 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS4BO75351 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
VPS4BO75351 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS4BO75351 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS4BO75351 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS4BO75351 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS4BO75351 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS4BO75351 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS4BO75351 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS4BO75351 DUX4L26-201ENST00000489078 1255 ntBASIC18.17■□□□□ 0.5
VPS4BO75351 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.17■□□□□ 0.5
VPS4BO75351 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS4BO75351 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
VPS4BO75351 AC068587.9-201ENST00000641814 219 ntBASIC18.17■□□□□ 0.5
VPS4BO75351 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
VPS4BO75351 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS4BO75351 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
VPS4BO75351 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS4BO75351 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS4BO75351 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS4BO75351 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC18.17■□□□□ 0.5
VPS4BO75351 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
VPS4BO75351 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.17■□□□□ 0.5
VPS4BO75351 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4BO75351 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4BO75351 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
VPS4BO75351 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
VPS4BO75351 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4BO75351 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4BO75351 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
VPS4BO75351 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.16■□□□□ 0.5
VPS4BO75351 AC018470.1-201ENST00000624790 3129 ntBASIC18.16■□□□□ 0.5
VPS4BO75351 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4BO75351 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC18.16■□□□□ 0.5
VPS4BO75351 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.16■□□□□ 0.5
VPS4BO75351 LIN28AP1-201ENST00000429574 405 ntBASIC18.16■□□□□ 0.5
VPS4BO75351 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC18.16■□□□□ 0.5
VPS4BO75351 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.16■□□□□ 0.5
VPS4BO75351 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
VPS4BO75351 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.16■□□□□ 0.5
VPS4BO75351 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4BO75351 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4BO75351 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4BO75351 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4BO75351 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4BO75351 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
VPS4BO75351 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS4BO75351 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS4BO75351 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS4BO75351 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS4BO75351 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS4BO75351 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS4BO75351 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS4BO75351 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
VPS4BO75351 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
VPS4BO75351 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VPS4BO75351 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS4BO75351 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.15■□□□□ 0.5
VPS4BO75351 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS4BO75351 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS4BO75351 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VPS4BO75351 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.15■□□□□ 0.5
VPS4BO75351 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
VPS4BO75351 SLC25A3P1-201ENST00000443844 931 ntBASIC18.15■□□□□ 0.5
VPS4BO75351 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC18.15■□□□□ 0.5
VPS4BO75351 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS4BO75351 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.15■□□□□ 0.5
VPS4BO75351 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.15■□□□□ 0.5
VPS4BO75351 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.15■□□□□ 0.5
VPS4BO75351 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.15■□□□□ 0.5
VPS4BO75351 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.15■□□□□ 0.5
VPS4BO75351 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS4BO75351 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS4BO75351 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS4BO75351 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VPS4BO75351 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
VPS4BO75351 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VPS4BO75351 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS4BO75351 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS4BO75351 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.15■□□□□ 0.5
VPS4BO75351 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS4BO75351 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.15■□□□□ 0.5
VPS4BO75351 AC112777.1-201ENST00000540175 1423 ntBASIC18.15■□□□□ 0.5
VPS4BO75351 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.5
VPS4BO75351 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms