Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 LIN28AP1-201ENST00000429574 405 ntBASIC25■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 HCG4P8-203ENST00000443049 980 ntBASIC25■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 AC022616.7-201ENST00000525383 220 ntBASIC25■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC25■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC25■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 AP000692.2-201ENST00000608391 879 ntBASIC25■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC25■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC25■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 NFYC-AS1-201ENST00000606277 1687 ntBASIC25■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC25■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC25■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC25■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC24.99■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC24.99■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC24.99■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 COPS8-203ENST00000409334 794 ntTSL 5 BASIC24.99■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 NDUFV2-AS1-203ENST00000608008 779 ntBASIC24.99■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 AL138781.2-201ENST00000617896 1843 ntBASIC24.99■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC24.99■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC24.99■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 COBL-210ENST00000632460 1941 ntTSL 5 BASIC24.98■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC24.98■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 MTMR9LP-203ENST00000426597 1545 ntBASIC24.98■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC24.98■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC24.98■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC24.98■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC24.98■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC24.98■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC24.98■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC24.98■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC24.98■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC24.98■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 CYP2D8P-201ENST00000433633 1490 ntBASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 ATP5G1P1-201ENST00000448724 379 ntBASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 FDX1P1-201ENST00000449115 551 ntBASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 AC010203.1-204ENST00000548782 407 ntBASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 AC026271.3-201ENST00000571884 352 ntBASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 DBP-204ENST00000599385 709 ntTSL 3 BASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC24.97■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC24.96■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC24.96■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC24.96■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC24.96■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC24.96■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC24.96■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC24.96■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 AC008556.1-201ENST00000610908 2040 ntBASIC24.96■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 KATNBL1P6-202ENST00000562413 1466 ntBASIC24.96■■□□□ 1.59
SENP3-EIF4A1A0A087X0R7 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC24.96■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms