Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.54■□□□□ 0.4
ATG4BQ9Y4P1 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
ATG4BQ9Y4P1 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4BQ9Y4P1 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4BQ9Y4P1 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4BQ9Y4P1 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
ATG4BQ9Y4P1 KRT18P23-201ENST00000435622 1283 ntBASIC17.54■□□□□ 0.4
ATG4BQ9Y4P1 SLC25A3P1-201ENST00000443844 931 ntBASIC17.54■□□□□ 0.4
ATG4BQ9Y4P1 AC009947.2-201ENST00000444014 672 ntBASIC17.54■□□□□ 0.4
ATG4BQ9Y4P1 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.54■□□□□ 0.4
ATG4BQ9Y4P1 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.54■□□□□ 0.4
ATG4BQ9Y4P1 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4BQ9Y4P1 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4BQ9Y4P1 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4BQ9Y4P1 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4BQ9Y4P1 NEFHP1-201ENST00000412845 2629 ntBASIC17.54■□□□□ 0.4
ATG4BQ9Y4P1 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
ATG4BQ9Y4P1 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC17.54■□□□□ 0.4
ATG4BQ9Y4P1 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4BQ9Y4P1 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4BQ9Y4P1 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
ATG4BQ9Y4P1 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.54■□□□□ 0.4
ATG4BQ9Y4P1 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
ATG4BQ9Y4P1 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.54■□□□□ 0.4
ATG4BQ9Y4P1 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATG4BQ9Y4P1 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.54■□□□□ 0.4
ATG4BQ9Y4P1 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 AP000593.1-201ENST00000393668 712 ntBASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 KRT18P21-201ENST00000515767 1272 ntBASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 AL512604.3-201ENST00000569583 964 ntBASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 AC005363.2-201ENST00000618631 242 ntBASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 AC099343.3-201ENST00000605834 2503 ntBASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.53■□□□□ 0.4
ATG4BQ9Y4P1 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 RCN1P1-201ENST00000400413 996 ntBASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 AC010203.1-204ENST00000548782 407 ntBASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 AC112497.1-201ENST00000624824 639 ntBASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 KRT8P7-201ENST00000533003 1432 ntBASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
ATG4BQ9Y4P1 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms