Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HIF3AQ9Y2N7 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
HIF3AQ9Y2N7 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HIF3AQ9Y2N7 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
HIF3AQ9Y2N7 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HIF3AQ9Y2N7 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 BUB3-202ENST00000368859 667 ntTSL 3 BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 AL023284.2-201ENST00000405850 579 ntBASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 AC097488.1-201ENST00000507834 756 ntBASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 PENK-204ENST00000518770 863 ntTSL 2 BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 REXO1L10P-201ENST00000615707 1290 ntBASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 REXO1L12P-201ENST00000622156 912 ntBASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 NOC2LP1-202ENST00000452600 2235 ntBASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 MYLKP1-201ENST00000509077 1580 ntBASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HIF3AQ9Y2N7 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HIF3AQ9Y2N7 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
HIF3AQ9Y2N7 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HIF3AQ9Y2N7 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
HIF3AQ9Y2N7 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HIF3AQ9Y2N7 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HIF3AQ9Y2N7 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HIF3AQ9Y2N7 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
HIF3AQ9Y2N7 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC16.74■□□□□ 0.27
HIF3AQ9Y2N7 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC16.74■□□□□ 0.27
HIF3AQ9Y2N7 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HIF3AQ9Y2N7 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC16.74■□□□□ 0.27
HIF3AQ9Y2N7 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HIF3AQ9Y2N7 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC16.74■□□□□ 0.27
HIF3AQ9Y2N7 MIR564-202ENST00000385049 94 ntBASIC16.74■□□□□ 0.27
HIF3AQ9Y2N7 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
HIF3AQ9Y2N7 MCCD1P1-208ENST00000445732 328 ntBASIC16.74■□□□□ 0.27
HIF3AQ9Y2N7 REXO2-216ENST00000544196 452 ntTSL 3 BASIC16.74■□□□□ 0.27
HIF3AQ9Y2N7 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC16.74■□□□□ 0.27
HIF3AQ9Y2N7 DECR2-212ENST00000627716 352 ntTSL 2 BASIC16.74■□□□□ 0.27
HIF3AQ9Y2N7 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HIF3AQ9Y2N7 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HIF3AQ9Y2N7 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HIF3AQ9Y2N7 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HIF3AQ9Y2N7 GPAT2P1-201ENST00000444924 1672 ntBASIC16.74■□□□□ 0.27
HIF3AQ9Y2N7 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms