Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LHX3Q9UBR4 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
LHX3Q9UBR4 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
LHX3Q9UBR4 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
LHX3Q9UBR4 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LHX3Q9UBR4 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LHX3Q9UBR4 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LHX3Q9UBR4 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LHX3Q9UBR4 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LHX3Q9UBR4 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.66■□□□□ 0.58
LHX3Q9UBR4 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.66■□□□□ 0.58
LHX3Q9UBR4 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.66■□□□□ 0.58
LHX3Q9UBR4 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.66■□□□□ 0.58
LHX3Q9UBR4 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.66■□□□□ 0.58
LHX3Q9UBR4 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.66■□□□□ 0.58
LHX3Q9UBR4 ZNF444P1-201ENST00000559497 298 ntBASIC18.66■□□□□ 0.58
LHX3Q9UBR4 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.66■□□□□ 0.58
LHX3Q9UBR4 AC120498.9-201ENST00000339021 3867 ntBASIC18.66■□□□□ 0.58
LHX3Q9UBR4 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.66■□□□□ 0.58
LHX3Q9UBR4 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.66■□□□□ 0.58
LHX3Q9UBR4 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LHX3Q9UBR4 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LHX3Q9UBR4 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LHX3Q9UBR4 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LHX3Q9UBR4 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LHX3Q9UBR4 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
LHX3Q9UBR4 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LHX3Q9UBR4 WIZP1-201ENST00000531444 2299 ntBASIC18.65■□□□□ 0.58
LHX3Q9UBR4 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LHX3Q9UBR4 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
LHX3Q9UBR4 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.65■□□□□ 0.58
LHX3Q9UBR4 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC18.65■□□□□ 0.58
LHX3Q9UBR4 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC18.65■□□□□ 0.58
LHX3Q9UBR4 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.65■□□□□ 0.58
LHX3Q9UBR4 NT5C-211ENST00000582170 653 ntTSL 3 BASIC18.65■□□□□ 0.58
LHX3Q9UBR4 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.65■□□□□ 0.58
LHX3Q9UBR4 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
LHX3Q9UBR4 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC18.65■□□□□ 0.58
LHX3Q9UBR4 AL121956.5-201ENST00000625261 221 ntBASIC18.65■□□□□ 0.58
LHX3Q9UBR4 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.65■□□□□ 0.58
LHX3Q9UBR4 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LHX3Q9UBR4 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
LHX3Q9UBR4 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LHX3Q9UBR4 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LHX3Q9UBR4 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC18.65■□□□□ 0.58
LHX3Q9UBR4 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LHX3Q9UBR4 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LHX3Q9UBR4 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
LHX3Q9UBR4 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.65■□□□□ 0.58
LHX3Q9UBR4 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.58
LHX3Q9UBR4 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
LHX3Q9UBR4 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
LHX3Q9UBR4 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.64■□□□□ 0.57
LHX3Q9UBR4 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LHX3Q9UBR4 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LHX3Q9UBR4 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
LHX3Q9UBR4 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
LHX3Q9UBR4 DAP-202ENST00000432074 1048 ntTSL 2 BASIC18.64■□□□□ 0.57
LHX3Q9UBR4 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.64■□□□□ 0.57
LHX3Q9UBR4 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LHX3Q9UBR4 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.64■□□□□ 0.57
LHX3Q9UBR4 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.64■□□□□ 0.57
LHX3Q9UBR4 FAM86EP-206ENST00000510506 987 ntBASIC18.64■□□□□ 0.57
LHX3Q9UBR4 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.64■□□□□ 0.57
LHX3Q9UBR4 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
LHX3Q9UBR4 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LHX3Q9UBR4 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
LHX3Q9UBR4 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LHX3Q9UBR4 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LHX3Q9UBR4 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LHX3Q9UBR4 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.64■□□□□ 0.57
LHX3Q9UBR4 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LHX3Q9UBR4 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LHX3Q9UBR4 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.63■□□□□ 0.57
LHX3Q9UBR4 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LHX3Q9UBR4 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
LHX3Q9UBR4 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LHX3Q9UBR4 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LHX3Q9UBR4 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LHX3Q9UBR4 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LHX3Q9UBR4 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LHX3Q9UBR4 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.63■□□□□ 0.57
LHX3Q9UBR4 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
LHX3Q9UBR4 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LHX3Q9UBR4 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LHX3Q9UBR4 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LHX3Q9UBR4 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LHX3Q9UBR4 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC18.63■□□□□ 0.57
LHX3Q9UBR4 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
LHX3Q9UBR4 TPM1-226ENST00000560959 925 ntTSL 2 BASIC18.63■□□□□ 0.57
LHX3Q9UBR4 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LHX3Q9UBR4 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LHX3Q9UBR4 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.63■□□□□ 0.57
LHX3Q9UBR4 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
LHX3Q9UBR4 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.63■□□□□ 0.57
LHX3Q9UBR4 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.63■□□□□ 0.57
LHX3Q9UBR4 AC073592.3-201ENST00000625118 1834 ntBASIC18.63■□□□□ 0.57
LHX3Q9UBR4 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.62■□□□□ 0.57
LHX3Q9UBR4 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
LHX3Q9UBR4 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms