Protein–RNA interactions for Protein: Q9NX63

CHCHD3, MICOS complex subunit MIC19, humanhuman

Known RBP Predictions only

Length 227 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3Q9NX63 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 CALM3-202ENST00000391918 702 ntTSL 2 BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 C2orf69P4-201ENST00000565394 541 ntBASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 SP2-202ENST00000613139 908 ntTSL 5 BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CHCHD3Q9NX63 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHCHD3Q9NX63 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CHCHD3Q9NX63 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
CHCHD3Q9NX63 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHCHD3Q9NX63 AC022211.2-201ENST00000585075 2527 ntBASIC17.24■□□□□ 0.35
CHCHD3Q9NX63 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
CHCHD3Q9NX63 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CHCHD3Q9NX63 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHCHD3Q9NX63 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC17.24■□□□□ 0.35
CHCHD3Q9NX63 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHCHD3Q9NX63 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.24■□□□□ 0.35
CHCHD3Q9NX63 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC17.24■□□□□ 0.35
CHCHD3Q9NX63 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CHCHD3Q9NX63 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHCHD3Q9NX63 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC17.24■□□□□ 0.35
CHCHD3Q9NX63 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC17.24■□□□□ 0.35
CHCHD3Q9NX63 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CHCHD3Q9NX63 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CHCHD3Q9NX63 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CHCHD3Q9NX63 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CHCHD3Q9NX63 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC17.24■□□□□ 0.35
CHCHD3Q9NX63 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHCHD3Q9NX63 AC005052.1-201ENST00000625181 2492 ntBASIC17.24■□□□□ 0.35
CHCHD3Q9NX63 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.24■□□□□ 0.35
CHCHD3Q9NX63 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHCHD3Q9NX63 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 CYP2T3P-201ENST00000601990 817 ntBASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 AL589743.5-201ENST00000616611 1050 ntBASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.23■□□□□ 0.35
CHCHD3Q9NX63 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHCHD3Q9NX63 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CHCHD3Q9NX63 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CHCHD3Q9NX63 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.22■□□□□ 0.35
CHCHD3Q9NX63 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CHCHD3Q9NX63 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms