Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC233702.3-201ENST00000578656 1387 ntBASIC19.07■□□□□ 0.64
TDP1Q9NUW8 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC19.07■□□□□ 0.64
TDP1Q9NUW8 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
TDP1Q9NUW8 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TDP1Q9NUW8 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
TDP1Q9NUW8 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC19.07■□□□□ 0.64
TDP1Q9NUW8 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC19.07■□□□□ 0.64
TDP1Q9NUW8 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.07■□□□□ 0.64
TDP1Q9NUW8 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC19.07■□□□□ 0.64
TDP1Q9NUW8 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC19.07■□□□□ 0.64
TDP1Q9NUW8 AL732292.2-201ENST00000609649 430 ntBASIC19.07■□□□□ 0.64
TDP1Q9NUW8 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC19.07■□□□□ 0.64
TDP1Q9NUW8 AC124864.1-201ENST00000623408 392 ntBASIC19.07■□□□□ 0.64
TDP1Q9NUW8 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TDP1Q9NUW8 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC19.07■□□□□ 0.64
TDP1Q9NUW8 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC19.07■□□□□ 0.64
TDP1Q9NUW8 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
TDP1Q9NUW8 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TDP1Q9NUW8 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TDP1Q9NUW8 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TDP1Q9NUW8 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TDP1Q9NUW8 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
TDP1Q9NUW8 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TDP1Q9NUW8 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.06■□□□□ 0.64
TDP1Q9NUW8 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC19.06■□□□□ 0.64
TDP1Q9NUW8 AL353692.3-201ENST00000407031 1396 ntBASIC19.06■□□□□ 0.64
TDP1Q9NUW8 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TDP1Q9NUW8 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19.06■□□□□ 0.64
TDP1Q9NUW8 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
TDP1Q9NUW8 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
TDP1Q9NUW8 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TDP1Q9NUW8 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
TDP1Q9NUW8 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
TDP1Q9NUW8 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
TDP1Q9NUW8 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TDP1Q9NUW8 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TDP1Q9NUW8 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
TDP1Q9NUW8 AC246785.2-201ENST00000432512 513 ntBASIC19.06■□□□□ 0.64
TDP1Q9NUW8 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC19.06■□□□□ 0.64
TDP1Q9NUW8 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC19.06■□□□□ 0.64
TDP1Q9NUW8 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19.06■□□□□ 0.64
TDP1Q9NUW8 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC19.06■□□□□ 0.64
TDP1Q9NUW8 AC074051.2-201ENST00000565115 352 ntBASIC19.06■□□□□ 0.64
TDP1Q9NUW8 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC19.06■□□□□ 0.64
TDP1Q9NUW8 LINC01711-201ENST00000598340 967 ntBASIC19.06■□□□□ 0.64
TDP1Q9NUW8 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC19.06■□□□□ 0.64
TDP1Q9NUW8 AL592071.1-201ENST00000611956 408 ntBASIC19.06■□□□□ 0.64
TDP1Q9NUW8 AC083906.6-201ENST00000641366 219 ntBASIC19.06■□□□□ 0.64
TDP1Q9NUW8 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
TDP1Q9NUW8 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
TDP1Q9NUW8 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TDP1Q9NUW8 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
TDP1Q9NUW8 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
TDP1Q9NUW8 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TDP1Q9NUW8 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TDP1Q9NUW8 AL049812.1-201ENST00000432563 2267 ntBASIC19.05■□□□□ 0.64
TDP1Q9NUW8 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
TDP1Q9NUW8 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TDP1Q9NUW8 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TDP1Q9NUW8 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC19.05■□□□□ 0.64
TDP1Q9NUW8 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TDP1Q9NUW8 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TDP1Q9NUW8 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TDP1Q9NUW8 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TDP1Q9NUW8 RN7SL606P-201ENST00000472779 293 ntBASIC19.05■□□□□ 0.64
TDP1Q9NUW8 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC19.05■□□□□ 0.64
TDP1Q9NUW8 Z69720.1-201ENST00000601483 472 ntBASIC19.05■□□□□ 0.64
TDP1Q9NUW8 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.05■□□□□ 0.64
TDP1Q9NUW8 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TDP1Q9NUW8 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TDP1Q9NUW8 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TDP1Q9NUW8 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TDP1Q9NUW8 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TDP1Q9NUW8 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
TDP1Q9NUW8 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TDP1Q9NUW8 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TDP1Q9NUW8 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
TDP1Q9NUW8 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
TDP1Q9NUW8 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC19.04■□□□□ 0.64
TDP1Q9NUW8 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TDP1Q9NUW8 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.04■□□□□ 0.64
TDP1Q9NUW8 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TDP1Q9NUW8 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TDP1Q9NUW8 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TDP1Q9NUW8 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TDP1Q9NUW8 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
TDP1Q9NUW8 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TDP1Q9NUW8 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TDP1Q9NUW8 KRT18P31-201ENST00000506277 1292 ntBASIC19.04■□□□□ 0.64
TDP1Q9NUW8 LINC00167-201ENST00000530583 1419 ntBASIC19.04■□□□□ 0.64
TDP1Q9NUW8 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TDP1Q9NUW8 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC19.04■□□□□ 0.64
TDP1Q9NUW8 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC19.04■□□□□ 0.64
TDP1Q9NUW8 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
TDP1Q9NUW8 KLK8-205ENST00000593490 267 ntTSL 3 BASIC19.04■□□□□ 0.64
TDP1Q9NUW8 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TDP1Q9NUW8 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
TDP1Q9NUW8 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TDP1Q9NUW8 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
TDP1Q9NUW8 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms