Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 DFFB-203ENST00000341385 572 ntTSL 5 BASIC20.73■□□□□ 0.91
VTA1Q9NP79 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VTA1Q9NP79 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VTA1Q9NP79 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
VTA1Q9NP79 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC20.73■□□□□ 0.91
VTA1Q9NP79 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC20.73■□□□□ 0.91
VTA1Q9NP79 CDV3-207ENST00000508481 661 ntTSL 3 BASIC20.73■□□□□ 0.91
VTA1Q9NP79 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC20.73■□□□□ 0.91
VTA1Q9NP79 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC20.73■□□□□ 0.91
VTA1Q9NP79 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VTA1Q9NP79 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC20.73■□□□□ 0.91
VTA1Q9NP79 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC20.73■□□□□ 0.91
VTA1Q9NP79 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
VTA1Q9NP79 AC011840.4-201ENST00000578471 627 ntBASIC20.73■□□□□ 0.91
VTA1Q9NP79 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
VTA1Q9NP79 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC20.73■□□□□ 0.91
VTA1Q9NP79 AC004263.2-201ENST00000617183 678 ntBASIC20.73■□□□□ 0.91
VTA1Q9NP79 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.73■□□□□ 0.91
VTA1Q9NP79 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.73■□□□□ 0.91
VTA1Q9NP79 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
VTA1Q9NP79 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VTA1Q9NP79 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VTA1Q9NP79 RNF165-205ENST00000588679 2904 ntBASIC20.72■□□□□ 0.91
VTA1Q9NP79 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
VTA1Q9NP79 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
VTA1Q9NP79 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.72■□□□□ 0.91
VTA1Q9NP79 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VTA1Q9NP79 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
VTA1Q9NP79 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
VTA1Q9NP79 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
VTA1Q9NP79 MIR149-201ENST00000384879 89 ntBASIC20.72■□□□□ 0.91
VTA1Q9NP79 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VTA1Q9NP79 DDT-203ENST00000403754 569 ntTSL 3 BASIC20.72■□□□□ 0.91
VTA1Q9NP79 DDT-206ENST00000430101 573 ntTSL 2 BASIC20.72■□□□□ 0.91
VTA1Q9NP79 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC20.72■□□□□ 0.91
VTA1Q9NP79 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC20.72■□□□□ 0.91
VTA1Q9NP79 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC20.72■□□□□ 0.91
VTA1Q9NP79 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
VTA1Q9NP79 GXYLT1P4-201ENST00000613576 1192 ntBASIC20.72■□□□□ 0.91
VTA1Q9NP79 CCNC-219ENST00000627680 896 ntTSL 5 BASIC20.72■□□□□ 0.91
VTA1Q9NP79 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.72■□□□□ 0.91
VTA1Q9NP79 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VTA1Q9NP79 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VTA1Q9NP79 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.72■□□□□ 0.91
VTA1Q9NP79 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
VTA1Q9NP79 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VTA1Q9NP79 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC20.71■□□□□ 0.91
VTA1Q9NP79 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC20.71■□□□□ 0.91
VTA1Q9NP79 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VTA1Q9NP79 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VTA1Q9NP79 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VTA1Q9NP79 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC20.71■□□□□ 0.91
VTA1Q9NP79 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
VTA1Q9NP79 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VTA1Q9NP79 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VTA1Q9NP79 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC20.71■□□□□ 0.91
VTA1Q9NP79 KRT16P4-201ENST00000453883 522 ntBASIC20.71■□□□□ 0.91
VTA1Q9NP79 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC20.71■□□□□ 0.91
VTA1Q9NP79 AC091607.1-201ENST00000490318 1060 ntBASIC20.71■□□□□ 0.91
VTA1Q9NP79 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC20.71■□□□□ 0.91
VTA1Q9NP79 AP002469.2-201ENST00000531724 424 ntBASIC20.71■□□□□ 0.91
VTA1Q9NP79 AC008687.5-201ENST00000593746 558 ntBASIC20.71■□□□□ 0.91
VTA1Q9NP79 AL121912.1-201ENST00000603683 238 ntBASIC20.71■□□□□ 0.91
VTA1Q9NP79 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
VTA1Q9NP79 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
VTA1Q9NP79 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VTA1Q9NP79 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
VTA1Q9NP79 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VTA1Q9NP79 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
VTA1Q9NP79 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
VTA1Q9NP79 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
VTA1Q9NP79 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VTA1Q9NP79 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VTA1Q9NP79 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VTA1Q9NP79 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VTA1Q9NP79 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
VTA1Q9NP79 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
VTA1Q9NP79 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.7■□□□□ 0.9
VTA1Q9NP79 AC007952.6-201ENST00000573168 2673 ntBASIC20.7■□□□□ 0.9
VTA1Q9NP79 AC003957.1-201ENST00000625108 2673 ntBASIC20.7■□□□□ 0.9
VTA1Q9NP79 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VTA1Q9NP79 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC20.7■□□□□ 0.9
VTA1Q9NP79 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
VTA1Q9NP79 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VTA1Q9NP79 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VTA1Q9NP79 AC106795.1-205ENST00000512851 1056 ntBASIC20.7■□□□□ 0.9
VTA1Q9NP79 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC20.7■□□□□ 0.9
VTA1Q9NP79 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
VTA1Q9NP79 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
VTA1Q9NP79 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
VTA1Q9NP79 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC20.7■□□□□ 0.9
VTA1Q9NP79 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VTA1Q9NP79 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VTA1Q9NP79 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VTA1Q9NP79 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VTA1Q9NP79 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VTA1Q9NP79 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
VTA1Q9NP79 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VTA1Q9NP79 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC20.69■□□□□ 0.9
VTA1Q9NP79 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms