Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VCX3AQ9NNX9 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VCX3AQ9NNX9 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VCX3AQ9NNX9 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VCX3AQ9NNX9 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.34■□□□□ 0.37
VCX3AQ9NNX9 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VCX3AQ9NNX9 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
VCX3AQ9NNX9 MIR572-201ENST00000384983 95 ntBASIC17.34■□□□□ 0.37
VCX3AQ9NNX9 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
VCX3AQ9NNX9 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC17.34■□□□□ 0.37
VCX3AQ9NNX9 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.34■□□□□ 0.37
VCX3AQ9NNX9 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
VCX3AQ9NNX9 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
VCX3AQ9NNX9 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.34■□□□□ 0.37
VCX3AQ9NNX9 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VCX3AQ9NNX9 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
VCX3AQ9NNX9 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
VCX3AQ9NNX9 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VCX3AQ9NNX9 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
VCX3AQ9NNX9 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VCX3AQ9NNX9 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VCX3AQ9NNX9 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
VCX3AQ9NNX9 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.33■□□□□ 0.37
VCX3AQ9NNX9 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
VCX3AQ9NNX9 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17.33■□□□□ 0.37
VCX3AQ9NNX9 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.37
VCX3AQ9NNX9 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC17.33■□□□□ 0.37
VCX3AQ9NNX9 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
VCX3AQ9NNX9 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
VCX3AQ9NNX9 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
VCX3AQ9NNX9 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
VCX3AQ9NNX9 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC17.33■□□□□ 0.36
VCX3AQ9NNX9 SRR-208ENST00000576848 588 ntTSL 4 BASIC17.33■□□□□ 0.36
VCX3AQ9NNX9 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC17.33■□□□□ 0.36
VCX3AQ9NNX9 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VCX3AQ9NNX9 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VCX3AQ9NNX9 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.33■□□□□ 0.36
VCX3AQ9NNX9 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VCX3AQ9NNX9 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
VCX3AQ9NNX9 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
VCX3AQ9NNX9 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.36
VCX3AQ9NNX9 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
VCX3AQ9NNX9 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VCX3AQ9NNX9 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VCX3AQ9NNX9 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VCX3AQ9NNX9 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VCX3AQ9NNX9 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VCX3AQ9NNX9 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 UBALD1-205ENST00000590891 2641 ntBASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
VCX3AQ9NNX9 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 PCDHB19P-201ENST00000570871 2371 ntBASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms