Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 MIR662-201ENST00000384847 95 ntBASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 RN7SL510P-201ENST00000581311 263 ntBASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.53■□□□□ 0.56
TM9SF3Q9HD45 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TM9SF3Q9HD45 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.52■□□□□ 0.56
TM9SF3Q9HD45 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TM9SF3Q9HD45 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
TM9SF3Q9HD45 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TM9SF3Q9HD45 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TM9SF3Q9HD45 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.52■□□□□ 0.56
TM9SF3Q9HD45 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
TM9SF3Q9HD45 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.52■□□□□ 0.56
TM9SF3Q9HD45 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.52■□□□□ 0.56
TM9SF3Q9HD45 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
TM9SF3Q9HD45 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TM9SF3Q9HD45 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.52■□□□□ 0.56
TM9SF3Q9HD45 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TM9SF3Q9HD45 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TM9SF3Q9HD45 CHCHD2P8-201ENST00000429873 447 ntBASIC18.52■□□□□ 0.56
TM9SF3Q9HD45 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
TM9SF3Q9HD45 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC18.52■□□□□ 0.56
TM9SF3Q9HD45 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC18.52■□□□□ 0.56
TM9SF3Q9HD45 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TM9SF3Q9HD45 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TM9SF3Q9HD45 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
TM9SF3Q9HD45 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.52■□□□□ 0.56
TM9SF3Q9HD45 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TM9SF3Q9HD45 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
TM9SF3Q9HD45 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC18.52■□□□□ 0.55
TM9SF3Q9HD45 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
TM9SF3Q9HD45 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
TM9SF3Q9HD45 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
TM9SF3Q9HD45 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
TM9SF3Q9HD45 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
TM9SF3Q9HD45 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 AL109659.2-201ENST00000606809 1674 ntBASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 RCC2P3-201ENST00000418112 1537 ntBASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 TSPY22P-201ENST00000427496 604 ntBASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 AC111152.3-201ENST00000569699 673 ntBASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.51■□□□□ 0.55
TM9SF3Q9HD45 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TM9SF3Q9HD45 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.5■□□□□ 0.55
TM9SF3Q9HD45 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TM9SF3Q9HD45 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.5■□□□□ 0.55
TM9SF3Q9HD45 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.5■□□□□ 0.55
TM9SF3Q9HD45 AL512353.2-201ENST00000448759 1962 ntBASIC18.5■□□□□ 0.55
TM9SF3Q9HD45 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
TM9SF3Q9HD45 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.5■□□□□ 0.55
TM9SF3Q9HD45 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.5■□□□□ 0.55
TM9SF3Q9HD45 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TM9SF3Q9HD45 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms