Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP29Q9HBJ7 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP29Q9HBJ7 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC19.12■□□□□ 0.65
USP29Q9HBJ7 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC19.12■□□□□ 0.65
USP29Q9HBJ7 AC097488.1-201ENST00000507834 756 ntBASIC19.12■□□□□ 0.65
USP29Q9HBJ7 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC19.12■□□□□ 0.65
USP29Q9HBJ7 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC19.12■□□□□ 0.65
USP29Q9HBJ7 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC19.12■□□□□ 0.65
USP29Q9HBJ7 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP29Q9HBJ7 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
USP29Q9HBJ7 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
USP29Q9HBJ7 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP29Q9HBJ7 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC19.11■□□□□ 0.65
USP29Q9HBJ7 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
USP29Q9HBJ7 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP29Q9HBJ7 GPAT2P1-201ENST00000444924 1672 ntBASIC19.11■□□□□ 0.65
USP29Q9HBJ7 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP29Q9HBJ7 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
USP29Q9HBJ7 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP29Q9HBJ7 AC073508.3-201ENST00000619697 1419 ntBASIC19.11■□□□□ 0.65
USP29Q9HBJ7 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP29Q9HBJ7 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
USP29Q9HBJ7 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC19.11■□□□□ 0.65
USP29Q9HBJ7 NOC2LP1-202ENST00000452600 2235 ntBASIC19.11■□□□□ 0.65
USP29Q9HBJ7 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
USP29Q9HBJ7 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP29Q9HBJ7 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
USP29Q9HBJ7 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
USP29Q9HBJ7 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
USP29Q9HBJ7 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.11■□□□□ 0.65
USP29Q9HBJ7 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC19.11■□□□□ 0.65
USP29Q9HBJ7 EGLN1P1-201ENST00000531623 762 ntBASIC19.11■□□□□ 0.65
USP29Q9HBJ7 MYC-208ENST00000641036 567 ntBASIC19.11■□□□□ 0.65
USP29Q9HBJ7 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP29Q9HBJ7 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP29Q9HBJ7 ABALON-201ENST00000629058 1903 ntBASIC19.11■□□□□ 0.65
USP29Q9HBJ7 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP29Q9HBJ7 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.11■□□□□ 0.65
USP29Q9HBJ7 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP29Q9HBJ7 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP29Q9HBJ7 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP29Q9HBJ7 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP29Q9HBJ7 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC19.11■□□□□ 0.65
USP29Q9HBJ7 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP29Q9HBJ7 AL162741.1-201ENST00000565563 1558 ntBASIC19.1■□□□□ 0.65
USP29Q9HBJ7 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
USP29Q9HBJ7 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC19.1■□□□□ 0.65
USP29Q9HBJ7 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP29Q9HBJ7 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP29Q9HBJ7 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP29Q9HBJ7 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP29Q9HBJ7 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
USP29Q9HBJ7 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
USP29Q9HBJ7 MIR564-202ENST00000385049 94 ntBASIC19.1■□□□□ 0.65
USP29Q9HBJ7 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP29Q9HBJ7 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC19.1■□□□□ 0.65
USP29Q9HBJ7 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC19.1■□□□□ 0.65
USP29Q9HBJ7 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC19.1■□□□□ 0.65
USP29Q9HBJ7 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP29Q9HBJ7 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.1■□□□□ 0.65
USP29Q9HBJ7 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP29Q9HBJ7 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC19.1■□□□□ 0.65
USP29Q9HBJ7 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP29Q9HBJ7 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.1■□□□□ 0.65
USP29Q9HBJ7 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP29Q9HBJ7 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP29Q9HBJ7 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC19.1■□□□□ 0.65
USP29Q9HBJ7 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC19.1■□□□□ 0.65
USP29Q9HBJ7 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP29Q9HBJ7 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP29Q9HBJ7 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP29Q9HBJ7 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP29Q9HBJ7 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.09■□□□□ 0.65
USP29Q9HBJ7 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP29Q9HBJ7 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
USP29Q9HBJ7 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
USP29Q9HBJ7 TSPY14P-201ENST00000303979 915 ntBASIC19.09■□□□□ 0.65
USP29Q9HBJ7 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.09■□□□□ 0.65
USP29Q9HBJ7 BUB3-202ENST00000368859 667 ntTSL 3 BASIC19.09■□□□□ 0.65
USP29Q9HBJ7 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP29Q9HBJ7 CA15P1-201ENST00000481698 905 ntBASIC19.09■□□□□ 0.65
USP29Q9HBJ7 AC128688.1-201ENST00000487626 519 ntBASIC19.09■□□□□ 0.65
USP29Q9HBJ7 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
USP29Q9HBJ7 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC19.09■□□□□ 0.65
USP29Q9HBJ7 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP29Q9HBJ7 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP29Q9HBJ7 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP29Q9HBJ7 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
USP29Q9HBJ7 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC19.09■□□□□ 0.65
USP29Q9HBJ7 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.08■□□□□ 0.65
USP29Q9HBJ7 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.08■□□□□ 0.65
USP29Q9HBJ7 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
USP29Q9HBJ7 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
USP29Q9HBJ7 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
USP29Q9HBJ7 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC19.08■□□□□ 0.65
USP29Q9HBJ7 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
USP29Q9HBJ7 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
USP29Q9HBJ7 MYLKP1-201ENST00000509077 1580 ntBASIC19.08■□□□□ 0.65
USP29Q9HBJ7 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USP29Q9HBJ7 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms