Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTCHD1Q96NR3 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.48■□□□□ 0.39
PTCHD1Q96NR3 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PTCHD1Q96NR3 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PTCHD1Q96NR3 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PTCHD1Q96NR3 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.48■□□□□ 0.39
PTCHD1Q96NR3 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTCHD1Q96NR3 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC17.48■□□□□ 0.39
PTCHD1Q96NR3 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC17.48■□□□□ 0.39
PTCHD1Q96NR3 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.48■□□□□ 0.39
PTCHD1Q96NR3 NME3-204ENST00000563498 920 ntTSL 2 BASIC17.48■□□□□ 0.39
PTCHD1Q96NR3 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.48■□□□□ 0.39
PTCHD1Q96NR3 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.48■□□□□ 0.39
PTCHD1Q96NR3 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.48■□□□□ 0.39
PTCHD1Q96NR3 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
PTCHD1Q96NR3 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
PTCHD1Q96NR3 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PTCHD1Q96NR3 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTCHD1Q96NR3 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTCHD1Q96NR3 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PTCHD1Q96NR3 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.48■□□□□ 0.39
PTCHD1Q96NR3 KRT8P7-201ENST00000533003 1432 ntBASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 CROCCP3-202ENST00000420820 1947 ntBASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 HOMER2P1-201ENST00000455653 964 ntBASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 AC022616.7-201ENST00000525383 220 ntBASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 LTBR-211ENST00000543190 785 ntTSL 3 BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.47■□□□□ 0.39
PTCHD1Q96NR3 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 NTF6B-201ENST00000591913 560 ntBASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 HOXB1-202ENST00000577092 1414 ntBASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTCHD1Q96NR3 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.38
PTCHD1Q96NR3 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.38
PTCHD1Q96NR3 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PTCHD1Q96NR3 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms