Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.62■□□□□ 0.57
VPS39Q96JC1 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
VPS39Q96JC1 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC18.62■□□□□ 0.57
VPS39Q96JC1 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.62■□□□□ 0.57
VPS39Q96JC1 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
VPS39Q96JC1 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS39Q96JC1 MIR6786-201ENST00000616843 113 ntBASIC18.62■□□□□ 0.57
VPS39Q96JC1 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS39Q96JC1 AC112777.1-201ENST00000540175 1423 ntBASIC18.62■□□□□ 0.57
VPS39Q96JC1 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS39Q96JC1 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.62■□□□□ 0.57
VPS39Q96JC1 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS39Q96JC1 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS39Q96JC1 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
VPS39Q96JC1 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS39Q96JC1 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS39Q96JC1 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.62■□□□□ 0.57
VPS39Q96JC1 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS39Q96JC1 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.62■□□□□ 0.57
VPS39Q96JC1 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS39Q96JC1 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS39Q96JC1 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS39Q96JC1 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.62■□□□□ 0.57
VPS39Q96JC1 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS39Q96JC1 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS39Q96JC1 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS39Q96JC1 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS39Q96JC1 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.61■□□□□ 0.57
VPS39Q96JC1 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS39Q96JC1 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
VPS39Q96JC1 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS39Q96JC1 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS39Q96JC1 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS39Q96JC1 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.61■□□□□ 0.57
VPS39Q96JC1 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS39Q96JC1 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS39Q96JC1 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.61■□□□□ 0.57
VPS39Q96JC1 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS39Q96JC1 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS39Q96JC1 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC18.61■□□□□ 0.57
VPS39Q96JC1 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS39Q96JC1 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC18.61■□□□□ 0.57
VPS39Q96JC1 B3GAT3P1-201ENST00000471720 806 ntBASIC18.61■□□□□ 0.57
VPS39Q96JC1 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.61■□□□□ 0.57
VPS39Q96JC1 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18.61■□□□□ 0.57
VPS39Q96JC1 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
VPS39Q96JC1 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS39Q96JC1 AC005332.8-201ENST00000622750 2735 ntBASIC18.61■□□□□ 0.57
VPS39Q96JC1 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
VPS39Q96JC1 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
VPS39Q96JC1 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
VPS39Q96JC1 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
VPS39Q96JC1 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS39Q96JC1 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS39Q96JC1 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.61■□□□□ 0.57
VPS39Q96JC1 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS39Q96JC1 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS39Q96JC1 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.6■□□□□ 0.57
VPS39Q96JC1 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.6■□□□□ 0.57
VPS39Q96JC1 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.6■□□□□ 0.57
VPS39Q96JC1 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS39Q96JC1 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS39Q96JC1 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS39Q96JC1 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
VPS39Q96JC1 KRT18P29-201ENST00000397031 1267 ntBASIC18.6■□□□□ 0.57
VPS39Q96JC1 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
VPS39Q96JC1 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.6■□□□□ 0.57
VPS39Q96JC1 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC18.6■□□□□ 0.57
VPS39Q96JC1 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VPS39Q96JC1 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.6■□□□□ 0.57
VPS39Q96JC1 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.6■□□□□ 0.57
VPS39Q96JC1 AL359736.2-201ENST00000621992 437 ntBASIC18.6■□□□□ 0.57
VPS39Q96JC1 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.6■□□□□ 0.57
VPS39Q96JC1 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.6■□□□□ 0.57
VPS39Q96JC1 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
VPS39Q96JC1 NOC2LP2-201ENST00000407594 1944 ntBASIC18.6■□□□□ 0.57
VPS39Q96JC1 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.6■□□□□ 0.57
VPS39Q96JC1 PKD1P1-201ENST00000458669 6805 ntBASIC18.6■□□□□ 0.57
VPS39Q96JC1 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS39Q96JC1 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
VPS39Q96JC1 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS39Q96JC1 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
VPS39Q96JC1 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
VPS39Q96JC1 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
VPS39Q96JC1 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VPS39Q96JC1 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS39Q96JC1 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS39Q96JC1 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
VPS39Q96JC1 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
VPS39Q96JC1 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.59■□□□□ 0.57
VPS39Q96JC1 FSCN1P1-201ENST00000568912 1481 ntBASIC18.59■□□□□ 0.57
VPS39Q96JC1 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VPS39Q96JC1 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS39Q96JC1 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.59■□□□□ 0.57
VPS39Q96JC1 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.59■□□□□ 0.57
VPS39Q96JC1 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.59■□□□□ 0.57
VPS39Q96JC1 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VPS39Q96JC1 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.59■□□□□ 0.57
VPS39Q96JC1 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.59■□□□□ 0.57
VPS39Q96JC1 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms