Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CHFRQ96EP1 HEIH-201ENST00000623091 1652 ntBASIC18.85■□□□□ 0.61
CHFRQ96EP1 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
CHFRQ96EP1 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.85■□□□□ 0.61
CHFRQ96EP1 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHFRQ96EP1 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC18.85■□□□□ 0.61
CHFRQ96EP1 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CHFRQ96EP1 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.85■□□□□ 0.61
CHFRQ96EP1 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.85■□□□□ 0.61
CHFRQ96EP1 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
CHFRQ96EP1 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.85■□□□□ 0.61
CHFRQ96EP1 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHFRQ96EP1 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
CHFRQ96EP1 DFFB-203ENST00000341385 572 ntTSL 5 BASIC18.85■□□□□ 0.61
CHFRQ96EP1 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CHFRQ96EP1 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHFRQ96EP1 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CHFRQ96EP1 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC18.85■□□□□ 0.61
CHFRQ96EP1 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CHFRQ96EP1 FICD-205ENST00000552758 603 ntTSL 2 BASIC18.85■□□□□ 0.61
CHFRQ96EP1 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC18.85■□□□□ 0.61
CHFRQ96EP1 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC18.85■□□□□ 0.61
CHFRQ96EP1 AFG3L1P-217ENST00000557444 2447 ntBASIC18.85■□□□□ 0.61
CHFRQ96EP1 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CHFRQ96EP1 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHFRQ96EP1 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHFRQ96EP1 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHFRQ96EP1 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.84■□□□□ 0.61
CHFRQ96EP1 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CHFRQ96EP1 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.84■□□□□ 0.61
CHFRQ96EP1 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CHFRQ96EP1 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHFRQ96EP1 AL353692.3-201ENST00000407031 1396 ntBASIC18.84■□□□□ 0.61
CHFRQ96EP1 AC007952.6-201ENST00000573168 2673 ntBASIC18.84■□□□□ 0.61
CHFRQ96EP1 AC003957.1-201ENST00000625108 2673 ntBASIC18.84■□□□□ 0.61
CHFRQ96EP1 AL032819.2-201ENST00000624543 2162 ntBASIC18.84■□□□□ 0.61
CHFRQ96EP1 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHFRQ96EP1 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.84■□□□□ 0.61
CHFRQ96EP1 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CHFRQ96EP1 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CHFRQ96EP1 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
CHFRQ96EP1 TSPY12P-201ENST00000421279 868 ntBASIC18.84■□□□□ 0.61
CHFRQ96EP1 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CHFRQ96EP1 CDV3-207ENST00000508481 661 ntTSL 3 BASIC18.84■□□□□ 0.61
CHFRQ96EP1 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.84■□□□□ 0.61
CHFRQ96EP1 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.84■□□□□ 0.61
CHFRQ96EP1 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.84■□□□□ 0.61
CHFRQ96EP1 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
CHFRQ96EP1 CALM3-211ENST00000598871 561 ntTSL 4 BASIC18.84■□□□□ 0.61
CHFRQ96EP1 Z69720.1-201ENST00000601483 472 ntBASIC18.84■□□□□ 0.61
CHFRQ96EP1 AL121912.1-201ENST00000603683 238 ntBASIC18.84■□□□□ 0.61
CHFRQ96EP1 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
CHFRQ96EP1 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CHFRQ96EP1 VPS51-217ENST00000639871 243 ntTSL 5 BASIC18.84■□□□□ 0.61
CHFRQ96EP1 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.84■□□□□ 0.61
CHFRQ96EP1 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHFRQ96EP1 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.84■□□□□ 0.61
CHFRQ96EP1 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHFRQ96EP1 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
CHFRQ96EP1 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHFRQ96EP1 NSUN5P1-202ENST00000421140 1535 ntBASIC18.84■□□□□ 0.61
CHFRQ96EP1 NSUN5P2-203ENST00000457352 1529 ntBASIC18.84■□□□□ 0.61
CHFRQ96EP1 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CHFRQ96EP1 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHFRQ96EP1 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHFRQ96EP1 KRT89P-201ENST00000620027 1478 ntBASIC18.84■□□□□ 0.61
CHFRQ96EP1 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.83■□□□□ 0.61
CHFRQ96EP1 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CHFRQ96EP1 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CHFRQ96EP1 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
CHFRQ96EP1 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
CHFRQ96EP1 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
CHFRQ96EP1 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHFRQ96EP1 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHFRQ96EP1 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHFRQ96EP1 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CHFRQ96EP1 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC18.83■□□□□ 0.6
CHFRQ96EP1 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC18.83■□□□□ 0.6
CHFRQ96EP1 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC18.83■□□□□ 0.6
CHFRQ96EP1 GUSBP12-201ENST00000513727 720 ntBASIC18.83■□□□□ 0.6
CHFRQ96EP1 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHFRQ96EP1 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CHFRQ96EP1 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
CHFRQ96EP1 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CHFRQ96EP1 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHFRQ96EP1 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.83■□□□□ 0.6
CHFRQ96EP1 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC18.83■□□□□ 0.6
CHFRQ96EP1 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
CHFRQ96EP1 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHFRQ96EP1 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.82■□□□□ 0.6
CHFRQ96EP1 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC18.82■□□□□ 0.6
CHFRQ96EP1 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHFRQ96EP1 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHFRQ96EP1 AC093484.2-201ENST00000580996 2166 ntBASIC18.82■□□□□ 0.6
CHFRQ96EP1 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHFRQ96EP1 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHFRQ96EP1 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHFRQ96EP1 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHFRQ96EP1 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHFRQ96EP1 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms