Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
SKA1Q96BD8 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
SKA1Q96BD8 AC068880.1-201ENST00000507289 2297 ntBASIC19.02■□□□□ 0.63
SKA1Q96BD8 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SKA1Q96BD8 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC19.01■□□□□ 0.63
SKA1Q96BD8 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.01■□□□□ 0.63
SKA1Q96BD8 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
SKA1Q96BD8 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.01■□□□□ 0.63
SKA1Q96BD8 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
SKA1Q96BD8 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
SKA1Q96BD8 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SKA1Q96BD8 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC19.01■□□□□ 0.63
SKA1Q96BD8 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SKA1Q96BD8 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SKA1Q96BD8 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SKA1Q96BD8 CD70-202ENST00000423145 881 ntTSL 2 BASIC19.01■□□□□ 0.63
SKA1Q96BD8 PHB2-202ENST00000440277 996 ntTSL 5 BASIC19.01■□□□□ 0.63
SKA1Q96BD8 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SKA1Q96BD8 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC19.01■□□□□ 0.63
SKA1Q96BD8 PRSS44-201ENST00000515154 1146 ntBASIC19.01■□□□□ 0.63
SKA1Q96BD8 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC19.01■□□□□ 0.63
SKA1Q96BD8 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC19.01■□□□□ 0.63
SKA1Q96BD8 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SKA1Q96BD8 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SKA1Q96BD8 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.01■□□□□ 0.63
SKA1Q96BD8 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.01■□□□□ 0.63
SKA1Q96BD8 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.01■□□□□ 0.63
SKA1Q96BD8 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.01■□□□□ 0.63
SKA1Q96BD8 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC19.01■□□□□ 0.63
SKA1Q96BD8 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SKA1Q96BD8 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SKA1Q96BD8 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC19.01■□□□□ 0.63
SKA1Q96BD8 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.01■□□□□ 0.63
SKA1Q96BD8 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
SKA1Q96BD8 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SKA1Q96BD8 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.01■□□□□ 0.63
SKA1Q96BD8 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
SKA1Q96BD8 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SKA1Q96BD8 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
SKA1Q96BD8 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SKA1Q96BD8 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SKA1Q96BD8 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SKA1Q96BD8 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19■□□□□ 0.63
SKA1Q96BD8 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SKA1Q96BD8 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SKA1Q96BD8 AL031133.1-201ENST00000406807 723 ntBASIC19■□□□□ 0.63
SKA1Q96BD8 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC19■□□□□ 0.63
SKA1Q96BD8 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19■□□□□ 0.63
SKA1Q96BD8 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC19■□□□□ 0.63
SKA1Q96BD8 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
SKA1Q96BD8 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC19■□□□□ 0.63
SKA1Q96BD8 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19■□□□□ 0.63
SKA1Q96BD8 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
SKA1Q96BD8 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19■□□□□ 0.63
SKA1Q96BD8 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
SKA1Q96BD8 AC011558.1-201ENST00000623459 338 ntBASIC19■□□□□ 0.63
SKA1Q96BD8 MYC-208ENST00000641036 567 ntBASIC19■□□□□ 0.63
SKA1Q96BD8 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
SKA1Q96BD8 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SKA1Q96BD8 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19■□□□□ 0.63
SKA1Q96BD8 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19■□□□□ 0.63
SKA1Q96BD8 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC19■□□□□ 0.63
SKA1Q96BD8 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
SKA1Q96BD8 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC19■□□□□ 0.63
SKA1Q96BD8 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC19■□□□□ 0.63
SKA1Q96BD8 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SKA1Q96BD8 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC19■□□□□ 0.63
SKA1Q96BD8 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC19■□□□□ 0.63
SKA1Q96BD8 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19■□□□□ 0.63
SKA1Q96BD8 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC19■□□□□ 0.63
SKA1Q96BD8 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SKA1Q96BD8 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC19■□□□□ 0.63
SKA1Q96BD8 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
SKA1Q96BD8 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19■□□□□ 0.63
SKA1Q96BD8 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC19■□□□□ 0.63
SKA1Q96BD8 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19■□□□□ 0.63
SKA1Q96BD8 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19■□□□□ 0.63
SKA1Q96BD8 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
SKA1Q96BD8 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
SKA1Q96BD8 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SKA1Q96BD8 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SKA1Q96BD8 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SKA1Q96BD8 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SKA1Q96BD8 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SKA1Q96BD8 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.99■□□□□ 0.63
SKA1Q96BD8 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SKA1Q96BD8 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SKA1Q96BD8 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SKA1Q96BD8 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SKA1Q96BD8 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SKA1Q96BD8 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SKA1Q96BD8 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SKA1Q96BD8 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.99■□□□□ 0.63
SKA1Q96BD8 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SKA1Q96BD8 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.99■□□□□ 0.63
SKA1Q96BD8 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SKA1Q96BD8 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC18.99■□□□□ 0.63
SKA1Q96BD8 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC18.99■□□□□ 0.63
SKA1Q96BD8 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.99■□□□□ 0.63
SKA1Q96BD8 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms