Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ATG4AQ8WYN0 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATG4AQ8WYN0 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.25■□□□□ 0.67
ATG4AQ8WYN0 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC19.25■□□□□ 0.67
ATG4AQ8WYN0 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC19.25■□□□□ 0.67
ATG4AQ8WYN0 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
ATG4AQ8WYN0 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
ATG4AQ8WYN0 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATG4AQ8WYN0 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ATG4AQ8WYN0 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATG4AQ8WYN0 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATG4AQ8WYN0 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC19.25■□□□□ 0.67
ATG4AQ8WYN0 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ATG4AQ8WYN0 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATG4AQ8WYN0 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC19.24■□□□□ 0.67
ATG4AQ8WYN0 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC19.24■□□□□ 0.67
ATG4AQ8WYN0 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATG4AQ8WYN0 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATG4AQ8WYN0 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATG4AQ8WYN0 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ATG4AQ8WYN0 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATG4AQ8WYN0 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATG4AQ8WYN0 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
ATG4AQ8WYN0 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC19.24■□□□□ 0.67
ATG4AQ8WYN0 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC19.24■□□□□ 0.67
ATG4AQ8WYN0 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC19.24■□□□□ 0.67
ATG4AQ8WYN0 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
ATG4AQ8WYN0 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
ATG4AQ8WYN0 FLYWCH1P1-201ENST00000460917 1874 ntBASIC19.24■□□□□ 0.67
ATG4AQ8WYN0 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATG4AQ8WYN0 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATG4AQ8WYN0 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC19.24■□□□□ 0.67
ATG4AQ8WYN0 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ATG4AQ8WYN0 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 MYLKP1-201ENST00000509077 1580 ntBASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 LTB4R2-202ENST00000528054 3092 ntBASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 FAM197Y1-201ENST00000421178 764 ntBASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 AL359736.2-201ENST00000621992 437 ntBASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC19.23■□□□□ 0.67
ATG4AQ8WYN0 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC19.22■□□□□ 0.67
ATG4AQ8WYN0 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATG4AQ8WYN0 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATG4AQ8WYN0 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.22■□□□□ 0.67
ATG4AQ8WYN0 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
ATG4AQ8WYN0 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATG4AQ8WYN0 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATG4AQ8WYN0 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC19.22■□□□□ 0.67
ATG4AQ8WYN0 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATG4AQ8WYN0 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ATG4AQ8WYN0 AL109659.2-201ENST00000606809 1674 ntBASIC19.22■□□□□ 0.67
ATG4AQ8WYN0 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
ATG4AQ8WYN0 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.22■□□□□ 0.67
ATG4AQ8WYN0 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC19.22■□□□□ 0.67
ATG4AQ8WYN0 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATG4AQ8WYN0 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.22■□□□□ 0.67
ATG4AQ8WYN0 DENND3-207ENST00000518347 850 ntTSL 2 BASIC19.22■□□□□ 0.67
ATG4AQ8WYN0 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
ATG4AQ8WYN0 SPIB-206ENST00000596074 847 ntTSL 2 BASIC19.22■□□□□ 0.67
ATG4AQ8WYN0 FAM197Y4-202ENST00000622692 608 ntBASIC19.22■□□□□ 0.67
ATG4AQ8WYN0 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC19.22■□□□□ 0.67
ATG4AQ8WYN0 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATG4AQ8WYN0 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATG4AQ8WYN0 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
ATG4AQ8WYN0 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19.22■□□□□ 0.67
ATG4AQ8WYN0 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATG4AQ8WYN0 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC19.22■□□□□ 0.67
ATG4AQ8WYN0 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
ATG4AQ8WYN0 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ATG4AQ8WYN0 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC19.21■□□□□ 0.67
ATG4AQ8WYN0 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
ATG4AQ8WYN0 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19.21■□□□□ 0.67
ATG4AQ8WYN0 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ATG4AQ8WYN0 REXO1L9P-201ENST00000604264 2108 ntBASIC19.21■□□□□ 0.67
ATG4AQ8WYN0 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms