Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP38Q8NB14 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP38Q8NB14 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP38Q8NB14 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
USP38Q8NB14 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.68■□□□□ 0.9
USP38Q8NB14 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.68■□□□□ 0.9
USP38Q8NB14 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
USP38Q8NB14 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP38Q8NB14 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP38Q8NB14 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP38Q8NB14 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
USP38Q8NB14 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP38Q8NB14 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP38Q8NB14 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP38Q8NB14 MCCD1P1-208ENST00000445732 328 ntBASIC20.68■□□□□ 0.9
USP38Q8NB14 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP38Q8NB14 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP38Q8NB14 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC20.68■□□□□ 0.9
USP38Q8NB14 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC20.68■□□□□ 0.9
USP38Q8NB14 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
USP38Q8NB14 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
USP38Q8NB14 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
USP38Q8NB14 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP38Q8NB14 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
USP38Q8NB14 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP38Q8NB14 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
USP38Q8NB14 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP38Q8NB14 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP38Q8NB14 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP38Q8NB14 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP38Q8NB14 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.68■□□□□ 0.9
USP38Q8NB14 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC20.68■□□□□ 0.9
USP38Q8NB14 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
USP38Q8NB14 NEFHP1-201ENST00000412845 2629 ntBASIC20.68■□□□□ 0.9
USP38Q8NB14 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP38Q8NB14 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
USP38Q8NB14 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP38Q8NB14 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP38Q8NB14 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
USP38Q8NB14 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
USP38Q8NB14 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.67■□□□□ 0.9
USP38Q8NB14 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
USP38Q8NB14 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC20.67■□□□□ 0.9
USP38Q8NB14 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.67■□□□□ 0.9
USP38Q8NB14 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC20.67■□□□□ 0.9
USP38Q8NB14 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
USP38Q8NB14 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP38Q8NB14 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP38Q8NB14 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP38Q8NB14 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP38Q8NB14 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP38Q8NB14 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
USP38Q8NB14 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP38Q8NB14 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
USP38Q8NB14 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
USP38Q8NB14 KRT18P13-201ENST00000400056 1290 ntBASIC20.67■□□□□ 0.9
USP38Q8NB14 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
USP38Q8NB14 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC20.67■□□□□ 0.9
USP38Q8NB14 GRAMD4P1-201ENST00000435181 1110 ntBASIC20.67■□□□□ 0.9
USP38Q8NB14 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20.67■□□□□ 0.9
USP38Q8NB14 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC20.67■□□□□ 0.9
USP38Q8NB14 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
USP38Q8NB14 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP38Q8NB14 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP38Q8NB14 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
USP38Q8NB14 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP38Q8NB14 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
USP38Q8NB14 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP38Q8NB14 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.66■□□□□ 0.9
USP38Q8NB14 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.66■□□□□ 0.9
USP38Q8NB14 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC20.66■□□□□ 0.9
USP38Q8NB14 AC092183.1-201ENST00000469884 875 ntBASIC20.66■□□□□ 0.9
USP38Q8NB14 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP38Q8NB14 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP38Q8NB14 SLC25A6P4-201ENST00000586535 553 ntBASIC20.66■□□□□ 0.9
USP38Q8NB14 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP38Q8NB14 AL732292.2-201ENST00000609649 430 ntBASIC20.66■□□□□ 0.9
USP38Q8NB14 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC20.66■□□□□ 0.9
USP38Q8NB14 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP38Q8NB14 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP38Q8NB14 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP38Q8NB14 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
USP38Q8NB14 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.66■□□□□ 0.9
USP38Q8NB14 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP38Q8NB14 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP38Q8NB14 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC20.66■□□□□ 0.9
USP38Q8NB14 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP38Q8NB14 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
USP38Q8NB14 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP38Q8NB14 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP38Q8NB14 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP38Q8NB14 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP38Q8NB14 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP38Q8NB14 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP38Q8NB14 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP38Q8NB14 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
USP38Q8NB14 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
USP38Q8NB14 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USP38Q8NB14 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC20.65■□□□□ 0.9
USP38Q8NB14 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms