Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
FOXA1P55317 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.97■□□□□ 0.47
FOXA1P55317 AL023284.2-201ENST00000405850 579 ntBASIC17.97■□□□□ 0.47
FOXA1P55317 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC17.97■□□□□ 0.47
FOXA1P55317 TSPY20P-201ENST00000450910 630 ntBASIC17.97■□□□□ 0.47
FOXA1P55317 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC17.97■□□□□ 0.47
FOXA1P55317 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.97■□□□□ 0.47
FOXA1P55317 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
FOXA1P55317 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.97■□□□□ 0.47
FOXA1P55317 KRT18P41-201ENST00000518924 1277 ntBASIC17.97■□□□□ 0.47
FOXA1P55317 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC17.97■□□□□ 0.47
FOXA1P55317 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC17.97■□□□□ 0.47
FOXA1P55317 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.97■□□□□ 0.47
FOXA1P55317 REXO1L9P-201ENST00000604264 2108 ntBASIC17.97■□□□□ 0.47
FOXA1P55317 CD177P1-201ENST00000606252 935 ntBASIC17.97■□□□□ 0.47
FOXA1P55317 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
FOXA1P55317 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC17.97■□□□□ 0.47
FOXA1P55317 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC17.97■□□□□ 0.47
FOXA1P55317 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
FOXA1P55317 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
FOXA1P55317 AP000997.3-201ENST00000623333 2250 ntBASIC17.97■□□□□ 0.47
FOXA1P55317 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
FOXA1P55317 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
FOXA1P55317 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
FOXA1P55317 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.97■□□□□ 0.47
FOXA1P55317 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.96■□□□□ 0.47
FOXA1P55317 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXA1P55317 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXA1P55317 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.96■□□□□ 0.47
FOXA1P55317 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXA1P55317 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
FOXA1P55317 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
FOXA1P55317 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
FOXA1P55317 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
FOXA1P55317 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
FOXA1P55317 AC096733.2-201ENST00000609937 1394 ntBASIC17.96■□□□□ 0.47
FOXA1P55317 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXA1P55317 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXA1P55317 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.96■□□□□ 0.47
FOXA1P55317 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
FOXA1P55317 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.96■□□□□ 0.47
FOXA1P55317 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXA1P55317 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC17.96■□□□□ 0.47
FOXA1P55317 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
FOXA1P55317 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC17.96■□□□□ 0.47
FOXA1P55317 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
FOXA1P55317 ITM2C-210ENST00000620962 501 ntBASIC17.96■□□□□ 0.47
FOXA1P55317 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.96■□□□□ 0.47
FOXA1P55317 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXA1P55317 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
FOXA1P55317 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXA1P55317 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXA1P55317 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.96■□□□□ 0.47
FOXA1P55317 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.96■□□□□ 0.47
FOXA1P55317 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.96■□□□□ 0.47
FOXA1P55317 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXA1P55317 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
FOXA1P55317 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXA1P55317 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.96■□□□□ 0.47
FOXA1P55317 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXA1P55317 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
FOXA1P55317 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.96■□□□□ 0.46
FOXA1P55317 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
FOXA1P55317 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA1P55317 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA1P55317 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC17.95■□□□□ 0.46
FOXA1P55317 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA1P55317 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA1P55317 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA1P55317 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
FOXA1P55317 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA1P55317 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.95■□□□□ 0.46
FOXA1P55317 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA1P55317 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
FOXA1P55317 PRORSD1P-201ENST00000295112 541 ntBASIC17.95■□□□□ 0.46
FOXA1P55317 PEX7-202ENST00000367756 680 ntTSL 3 BASIC17.95■□□□□ 0.46
FOXA1P55317 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
FOXA1P55317 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.95■□□□□ 0.46
FOXA1P55317 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC17.95■□□□□ 0.46
FOXA1P55317 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC17.95■□□□□ 0.46
FOXA1P55317 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA1P55317 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.95■□□□□ 0.46
FOXA1P55317 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC17.95■□□□□ 0.46
FOXA1P55317 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.95■□□□□ 0.46
FOXA1P55317 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.95■□□□□ 0.46
FOXA1P55317 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.95■□□□□ 0.46
FOXA1P55317 CFL2-205ENST00000555765 632 ntTSL 2 BASIC17.95■□□□□ 0.46
FOXA1P55317 IRX5-204ENST00000560154 879 ntTSL 5 BASIC17.95■□□□□ 0.46
FOXA1P55317 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC17.95■□□□□ 0.46
FOXA1P55317 GRAP-204ENST00000573099 846 ntTSL 3 BASIC17.95■□□□□ 0.46
FOXA1P55317 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC17.95■□□□□ 0.46
FOXA1P55317 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA1P55317 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
FOXA1P55317 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA1P55317 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA1P55317 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA1P55317 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA1P55317 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA1P55317 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA1P55317 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms