Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
MSX2P35548 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC17.71■□□□□ 0.43
MSX2P35548 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC17.71■□□□□ 0.43
MSX2P35548 DUSP5P2-201ENST00000426873 1033 ntBASIC17.71■□□□□ 0.43
MSX2P35548 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC17.71■□□□□ 0.43
MSX2P35548 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
MSX2P35548 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
MSX2P35548 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSX2P35548 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSX2P35548 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.71■□□□□ 0.43
MSX2P35548 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSX2P35548 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSX2P35548 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSX2P35548 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSX2P35548 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSX2P35548 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSX2P35548 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
MSX2P35548 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSX2P35548 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.42
MSX2P35548 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.71■□□□□ 0.42
MSX2P35548 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
MSX2P35548 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
MSX2P35548 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
MSX2P35548 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSX2P35548 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSX2P35548 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSX2P35548 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.7■□□□□ 0.42
MSX2P35548 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
MSX2P35548 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
MSX2P35548 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.7■□□□□ 0.42
MSX2P35548 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
MSX2P35548 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSX2P35548 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSX2P35548 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC17.7■□□□□ 0.42
MSX2P35548 AF201337.1-201ENST00000520239 748 ntBASIC17.7■□□□□ 0.42
MSX2P35548 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.7■□□□□ 0.42
MSX2P35548 MAX-217ENST00000557277 728 ntTSL 3 BASIC17.7■□□□□ 0.42
MSX2P35548 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC17.7■□□□□ 0.42
MSX2P35548 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC17.7■□□□□ 0.42
MSX2P35548 AC068587.9-201ENST00000641814 219 ntBASIC17.7■□□□□ 0.42
MSX2P35548 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSX2P35548 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.7■□□□□ 0.42
MSX2P35548 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
MSX2P35548 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSX2P35548 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
MSX2P35548 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.7■□□□□ 0.42
MSX2P35548 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSX2P35548 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
MSX2P35548 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSX2P35548 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSX2P35548 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC17.7■□□□□ 0.42
MSX2P35548 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
MSX2P35548 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSX2P35548 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.69■□□□□ 0.42
MSX2P35548 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSX2P35548 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
MSX2P35548 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSX2P35548 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
MSX2P35548 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSX2P35548 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSX2P35548 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
MSX2P35548 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.69■□□□□ 0.42
MSX2P35548 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.69■□□□□ 0.42
MSX2P35548 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
MSX2P35548 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSX2P35548 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.69■□□□□ 0.42
MSX2P35548 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSX2P35548 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC17.69■□□□□ 0.42
MSX2P35548 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
MSX2P35548 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC17.69■□□□□ 0.42
MSX2P35548 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC17.69■□□□□ 0.42
MSX2P35548 AL160286.2-201ENST00000567150 934 ntBASIC17.69■□□□□ 0.42
MSX2P35548 AL050303.2-201ENST00000619798 666 ntBASIC17.69■□□□□ 0.42
MSX2P35548 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
MSX2P35548 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSX2P35548 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
MSX2P35548 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSX2P35548 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
MSX2P35548 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSX2P35548 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.69■□□□□ 0.42
MSX2P35548 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSX2P35548 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
MSX2P35548 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
MSX2P35548 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
MSX2P35548 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.69■□□□□ 0.42
MSX2P35548 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
MSX2P35548 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
MSX2P35548 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
MSX2P35548 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.68■□□□□ 0.42
MSX2P35548 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC17.68■□□□□ 0.42
MSX2P35548 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSX2P35548 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC17.68■□□□□ 0.42
MSX2P35548 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
MSX2P35548 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
MSX2P35548 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSX2P35548 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSX2P35548 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
MSX2P35548 SIRPAP1-201ENST00000448467 1770 ntBASIC17.68■□□□□ 0.42
MSX2P35548 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
MSX2P35548 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms